PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_B288EE729.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 81aa    MW: 9059.42 Da    PI: 10.3636
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_B288EE729.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF817.7e-26959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           +ri+n +n qvtfskRr g++KKA EL +LCda+ a+iifsstg ly++ s
  Traes_5DS_B288EE729.1  9 ERIDNATNHQVTFSKRRGGLMKKARELTILCDADLALIIFSSTGPLYDFTS 59
                           69**********************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-34160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.819161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.23E-26269IPR002100Transcription factor, MADS-box
CDDcd002653.95E-35260No hitNo description
PRINTSPR004048.2E-27323IPR002100Transcription factor, MADS-box
PfamPF003199.5E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-273859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
WGRGKIAIER IDNATNHQVT FSKRRGGLMK KARELTILCD ADLALIIFSS TGPLYDFTSS  60
RPITAGFWEK PTQISSILHP N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-18160160MEF2C
5f28_B2e-18160160MEF2C
5f28_C2e-18160160MEF2C
5f28_D2e-18160160MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM5029012e-62AM502901.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM31A (WM31A gene).
GenBankAM5029022e-62AM502902.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM31B (WM31B gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153468.12e-33MADS-box transcription factor 25-like
SwissprotQ84NC51e-29MAD25_ORYSJ; MADS-box transcription factor 25
TrEMBLA0A446SLJ92e-33A0A446SLJ9_TRITD; Uncharacterized protein
STRINGTraes_5DS_B288EE729.13e-54(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.22e-28AGAMOUS-like 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  4. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]