PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DS_4673CFE71.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | Dof | ||||||||
Protein Properties | Length: 345aa MW: 35681.6 Da PI: 8.6945 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.6 | 5.7e-38 | 112 | 169 | 5 | 62 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +l+cprCds+ntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+n k+s Traes_5DS_4673CFE71.1 112 TLRCPRCDSANTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNTKRS 169 679***************************************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-31 | 95 | 165 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.273 | 113 | 167 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.6E-31 | 113 | 167 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 115 | 151 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MVFSSFPIFL DPPSWTQMQQ QQPLQCFMGG GGGSEHQHHQ LIPASTGQLA PLPDVPGNTA 60 ASAPAVAGSS SASLQLVVSG QQGNPGEQPP RPSVSMTERA RMARVPLPEP GTLRCPRCDS 120 ANTKFCYFNN YSLSQPRHFC KACRRYWTRG GALRNVPVGG GCRRNTKRSS KKSSRQGQGQ 180 GGGGAVAAAT SSSSTTSTST TTSAAAATAA DVIASMQALP HHLGGLPAAA ALEASLEGYH 240 SHSHHQHHNL PFLPPQFLQQ GLHGYHFADG DIGSQLADGF PRGVASGLLA QLASIKMEEH 300 GAGAGGTGGG FVGAHEQYWP GSGGGGGWPT EFLSGFSSNS SGNVM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK371779 | 0.0 | AK371779.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2141F19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020170526.1 | 0.0 | dof zinc finger protein DOF5.1-like | ||||
TrEMBL | A0A3B6MME6 | 0.0 | A0A3B6MME6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453JXG2 | 0.0 | A0A453JXG2_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5DS_4673CFE71.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02460.1 | 6e-38 | Dof family protein |
Publications ? help Back to Top | |||
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