PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_44A8E7C76.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CPP
Protein Properties Length: 350aa    MW: 39055.1 Da    PI: 7.7666
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_44A8E7C76.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.51.5e-143168340
                    TCR  3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                           +++C+Ckks+Clk+YC Cfa+g++Cse C C+ C Nk 
  Traes_5DS_44A8E7C76.1 31 CRTCSCKKSRCLKLYCVCFASGSQCSELCGCDPCYNKP 68
                           789*********************************96 PP
2TCR45.41.6e-14107142439
                    TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                            ++C+Ckks ClkkYC+C++ g+ Cs +CkC+dCkN 
  Traes_5DS_44A8E7C76.1 107 RKCTCKKSGCLKKYCDCYQGGAGCSINCKCDDCKNP 142
                            79*********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011148.4E-92970IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163426.92830144IPR005172CRC domain
PfamPF036384.5E-103267IPR005172CRC domain
SMARTSM011141.7E-11106145IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.8E-11107141IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
AAVWTAVSPP AEANGSSDRK KKRKAEDGEG CRTCSCKKSR CLKLYCVCFA SGSQCSELCG  60
CDPCYNKPIH GVQQNTPPGL PLQVVRPAEA GQNSAEFARY QMDFFRRKCT CKKSGCLKKY  120
CDCYQGGAGC SINCKCDDCK NPYGKKVGVI LDGKSILATP TPGPTPIERN GTEVISSDDD  180
DDDEDDYYMN RPLSPIPPSP VSRESSFQQE TLVGVEVHTV NGHLYPKPLT QVRPESWQLS  240
RRPAEEARGE QWRYMRRPSE DGTSDAMEGH ADPKFHHQRD NNNKQRESPA DNRFSIPRCI  300
EVMNGMADLS PVDKSLAPDV FLDPSNREIF LSLSVDIRTM WLKRKMRSLV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3754080.0AK375408.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3093G12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189112.10.0protein tesmin/TSO1-like CXC 5
TrEMBLA0A453JQV50.0A0A453JQV5_AEGTS; Uncharacterized protein
STRINGTraes_5DS_44A8E7C76.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP96102834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.17e-39TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]