PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5DS_011851EE7.1

Common Name

TaOBF1d

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bZIP

Protein Properties

Length: 157aa MW: 17413.5 Da PI: 9.2474

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5DS_011851EE7.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.4	4.3e-15	30	88	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +re+r+ +NRe+ArrsR+RK++ ++eL ++v+ L+aeN + +++ ++ + ++++e+ Traes_5DS_011851EE7.1 30 RREKRRLSNRESARRSRLRKQQHLDELVQEVARLKAENARVLARANDITGQFVRVDQEN 88 89*************************************99999998887777666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.8E-17	26	90	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.5E-11	28	78	No hit	No description
PROSITE profile	PS50217	11.197	28	91	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.9E-11	30	78	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.88E-11	30	82	No hit	No description
CDD	cd14702	7.00E-17	31	81	No hit	No description
PROSITE pattern	PS00036	0	33	48	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MSSSSLSPGG GRLSGSDGDS GATFSAGDNR REKRRLSNRE SARRSRLRKQ QHLDELVQEV 60 ARLKAENARV LARANDITGQ FVRVDQENTV LRARAAELGD RLRSVNQVLR VVEEFSGVAM 120 DIQEECPPDD PLLRPWQIPY PATAMPIAAT ATHMLQY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	42	48	RRSRLRK
2	42	49	RRSRLRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB334131	0.0	AB334131.1 Triticum aestivum TaOBF1d mRNA for basic region/leucine zipper protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020184976.1	1e-111	ocs element-binding factor 1-like
Swissprot	P24068	6e-83	OCS1_MAIZE; Ocs element-binding factor 1
TrEMBL	A0A453JZ19	1e-110	A0A453JZ19_AEGTS; Uncharacterized protein
TrEMBL	A9ZPJ5	1e-110	A9ZPJ5_WHEAT; Basic region/leucine zipper protein
STRING	Traes_5DS_011851EE7.1	1e-111	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1886	35	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G62420.1	3e-31	basic region/leucine zipper motif 53

Publications ? help Back to Top
Kobayashi F, et al. Development of abiotic stress tolerance via bZIP-type transcription factor LIP19 in common wheat. J. Exp. Bot., 2008. 59(4): p. 891-905 [PMID:18326864] Singh K, et al. OCSBF-1, a maize ocs enhancer binding factor: isolation and expression during development. Plant Cell, 1990. 2(9): p. 891-903 [PMID:2152133] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]