PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_C93641E43.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 341aa    MW: 37185.4 Da    PI: 6.3172
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_C93641E43.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.22.9e-27120180158
                            ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                            +dDg++WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+r++edp +++++Y+geH++
  Traes_5DL_C93641E43.1 120 VDDGHSWRKYGQKDILGAKHPRGYYRCTHRksqGCAATKQVQRADEDPALFDVIYHGEHTC 180
                            59***************************98899*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-27114181IPR003657WRKY domain
PROSITE profilePS5081122.504115178IPR003657WRKY domain
SuperFamilySSF1182901.03E-24118180IPR003657WRKY domain
SMARTSM007741.6E-39120182IPR003657WRKY domain
PfamPF031065.4E-27121180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MESVDENGGS RLVVTELGYI KELVRQLDVN LGGCPDHCKR LAAQIFALTE RSIGMIRSGH  60
YDCRKRSAAG LDSPPFSATP SPLSDVSGMP FHNNKKRKTM EKRKHQVRVS SEGGGAETPV  120
DDGHSWRKYG QKDILGAKHP RGYYRCTHRK SQGCAATKQV QRADEDPALF DVIYHGEHTC  180
VHKTVATAAA AMAQPAEENP DARRHLQNLS TSLTVNTEGL TATAGHQGCG TTTSFCFSSQ  240
AAGVLTTPQE HYPFSMPSTP ENCFGQRASL STSLEPSPVT SDSNRFSMNP FQAEWRAQSE  300
YDEVVSALVA AGTMPALAME MEEETAFSLD EFEFDVSSFL A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-22120180868OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3770660.0AK377066.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3147D20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200629.10.0WRKY transcription factor WRKY62-like
TrEMBLA0A3B6MS490.0A0A3B6MS49_WHEAT; Uncharacterized protein
TrEMBLA0A453KMA80.0A0A453KMA8_AEGTS; Uncharacterized protein
STRINGTraes_5DL_C93641E43.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.17e-34WRKY family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]