PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5DL_C5D9E96D4.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Dof

Protein Properties

Length: 330aa MW: 33914.6 Da PI: 7.9937

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5DL_C5D9E96D4.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	4.8e-39	32	91	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e++++cprC+s ntkfCyynnys+sqPryfCkaCrryWt+GG+lrnvP+Ggg+rk k+s Traes_5DL_C5D9E96D4.1 32 PEQKVECPRCKSGNTKFCYYNNYSMSQPRYFCKACRRYWTHGGSLRNVPIGGGCRKPKRS 91 7899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	30	90	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.6E-33	34	90	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.649	36	90	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	38	74	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048364	Biological Process	root development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MEEVFPSNSK SKAGQMAGEA IAGAEKKPRP KPEQKVECPR CKSGNTKFCY YNNYSMSQPR 60 YFCKACRRYW THGGSLRNVP IGGGCRKPKR SGTSDAHKLG VASSPEPTTV VPPSTCTGMN 120 FANVLPTFMS VGFEIPSSLS LTAFGSSSSS NTAAMMSPGG TTSFLDVLRG GAGGLLDGSL 180 SQNNGYYYGG PAIGSGNGML MTPPAVSFGI PVPMQQHGDL VVGGNGIGAA TASIFQGATS 240 EEGDDGMGGV MGLQWQPQVG NGGGGGGVSG GVHHLGTGNN VTMGNSNIHN NNNNDSGGDD 300 NNGGSSRDCY WINNGGSNPW QSLLNSSSLM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY496057	0.0	AY496057.2 Triticum aestivum Dof DNA-binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190796.1	0.0	dof zinc finger protein DOF3.2-like
Swissprot	O24463	3e-38	PBF_MAIZE; Dof zinc finger protein PBF
TrEMBL	A0A3B6MNC7	0.0	A0A3B6MNC7_WHEAT; Uncharacterized protein
STRING	Traes_5DL_C5D9E96D4.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	1e-33	TARGET OF MONOPTEROS 6

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Lang Z, et al. Defining the Role of prolamin-box binding factor1 Gene During Maize Domestication. J. Hered., 2014 Jul-Aug. 105(4): p. 576-582 [PMID:24683184] Zhang Z,Zheng X,Yang J,Messing J,Wu Y Maize endosperm-specific transcription factors O2 and PBF network the regulation of protein and starch synthesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(39): p. 10842-7 [PMID:27621432]