PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_C5D9E96D4.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | Dof | ||||||||
Protein Properties | Length: 330aa MW: 33914.6 Da PI: 7.9937 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124 | 4.8e-39 | 32 | 91 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e++++cprC+s ntkfCyynnys+sqPryfCkaCrryWt+GG+lrnvP+Ggg+rk k+s Traes_5DL_C5D9E96D4.1 32 PEQKVECPRCKSGNTKFCYYNNYSMSQPRYFCKACRRYWTHGGSLRNVPIGGGCRKPKRS 91 7899*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-30 | 30 | 90 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.6E-33 | 34 | 90 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.649 | 36 | 90 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 38 | 74 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MEEVFPSNSK SKAGQMAGEA IAGAEKKPRP KPEQKVECPR CKSGNTKFCY YNNYSMSQPR 60 YFCKACRRYW THGGSLRNVP IGGGCRKPKR SGTSDAHKLG VASSPEPTTV VPPSTCTGMN 120 FANVLPTFMS VGFEIPSSLS LTAFGSSSSS NTAAMMSPGG TTSFLDVLRG GAGGLLDGSL 180 SQNNGYYYGG PAIGSGNGML MTPPAVSFGI PVPMQQHGDL VVGGNGIGAA TASIFQGATS 240 EEGDDGMGGV MGLQWQPQVG NGGGGGGVSG GVHHLGTGNN VTMGNSNIHN NNNNDSGGDD 300 NNGGSSRDCY WINNGGSNPW QSLLNSSSLM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY496057 | 0.0 | AY496057.2 Triticum aestivum Dof DNA-binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020190796.1 | 0.0 | dof zinc finger protein DOF3.2-like | ||||
Swissprot | O24463 | 3e-38 | PBF_MAIZE; Dof zinc finger protein PBF | ||||
TrEMBL | A0A3B6MNC7 | 0.0 | A0A3B6MNC7_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5DL_C5D9E96D4.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 1e-33 | TARGET OF MONOPTEROS 6 |
Publications ? help Back to Top | |||
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