PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_B49D156B7.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 70aa    MW: 8045.99 Da    PI: 10.2073
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_B49D156B7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.61e-152570149
                    AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaa 49
                           s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a
  Traes_5DL_B49D156B7.1 25 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMA 70
                           89****99**********99966...3.6******************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.05E-132570IPR016177DNA-binding domain
PfamPF008475.9E-122570IPR001471AP2/ERF domain
CDDcd000181.51E-152570No hitNo description
SMARTSM003805.7E-72670IPR001471AP2/ERF domain
PROSITE profilePS51032152670IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-132670IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MEGQSREEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ  60
EEAAMAYDMA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116175e-66AK111617.1 Oryza sativa Japonica Group cDNA clone:J013102L16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027174086.14e-44AP2-like ethylene-responsive transcription factor At1g79700
SwissprotQ94AN48e-36AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A453KWF91e-43A0A453KWF9_AEGTS; Uncharacterized protein
TrEMBLA0A453KWG62e-43A0A453KWG6_AEGTS; Uncharacterized protein
STRINGSb02g025080.16e-43(Sorghum bicolor)
STRINGTraes_5DL_B49D156B7.14e-44(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1858759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.21e-40ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]