 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Traes_5DL_81A859497.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
| Family |
C2H2 |
| Protein Properties |
Length: 155aa MW: 16218.1 Da PI: 7.2733 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Traes_5DL_81A859497.1 | genome | IWGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 12.9 | 0.00032 | 53 | 75 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C++C++ F ++ L H++ H
Traes_5DL_81A859497.1 53 FACNYCHRKFFSSQALGGHQNAH 75
78*****************9988 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 155 aa
Download sequence Send
to blast |
MEGEAPQSHQ LLLHGVSLDL RLDTTAHQQR GARRPASPAP TPVALDQAGK EAFACNYCHR 60
KFFSSQALGG HQNAHKLERT LAKRSRDASA TAAAATATPS SHWLHGGGGE LWTYSASAAA 120
PDSTTMAPLM GMGWAGSTTA DGGEAVPEMD LSLKL
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC137592 | 5e-43 | AC137592.2 Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence. |
| GenBank | AP005090 | 5e-43 | AP005090.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1065_E04. |
| GenBank | AP014965 | 5e-43 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012617 | 5e-43 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
