PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_4ABC24378.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 847aa MW: 96339.5 Da PI: 6.9336 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 80.6 | 2.7e-25 | 95 | 183 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY +YA +vGFsvr+++s+ksk +++i++ +fvCskeg+++e++ +k+r++ a+ r gC+a+l+v ++ d+kw+ tkl++eHnHe Traes_5DL_4ABC24378.2 95 FYIAYAGRVGFSVRIARSRKSKCSESIIMLRFVCSKEGFSKEKRVVaGKKTRKRLASIREGCNAMLEVLRRGDNKWVATKLVKEHNHE 182 9**************************************999887646777888899******************************9 PP FAR1 89 l 89 + Traes_5DL_4ABC24378.2 183 V 183 6 PP | |||||||
2 | FAR1 | 63.5 | 6.2e-20 | 217 | 303 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA ++GF+vr+++s+ks ++++ ++ ++vCs++ +++ ++++ ++r +r gC+a +++ ++++g+w+v+kl leH+Hel Traes_5DL_4ABC24378.2 217 FYYSYAIRAGFEVRVRQSRKS-QDESLKMLKLVCSRHRYHSGRENN--GDDTKRHPSRDGCNALFEIIRKDKGVWRVSKLILEHTHEL 301 9*******************9.6777***************99988..88889999*******************************9 PP FAR1 90 ap 91 +p Traes_5DL_4ABC24378.2 302 NP 303 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.3E-23 | 95 | 183 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 2.9E-17 | 217 | 303 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.0E-19 | 405 | 495 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.569 | 671 | 719 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 4.0E-5 | 679 | 716 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.3E-5 | 694 | 721 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 847 aa Download sequence Send to blast |
MEVGGQAMME PQGVELEDDS INFWASLGVS THVHGVDQMA LHNVHILDHQ GQSLPPAVVS 60 QPESVCKELF PVEADPCLEP RVGMEFESGE AAKTFYIAYA GRVGFSVRIA RSRKSKCSES 120 IIMLRFVCSK EGFSKEKRVV AGKKTRKRLA SIREGCNAML EVLRRGDNKW VATKLVKEHN 180 HEVGMPSTVH YIATESDTMV DPYIDMEFES LESAKTFYYS YAIRAGFEVR VRQSRKSQDE 240 SLKMLKLVCS RHRYHSGREN NGDDTKRHPS RDGCNALFEI IRKDKGVWRV SKLILEHTHE 300 LNPAPASSVC CVRSQGEILV IAKNFADTRN LLLNGQDSQP RREIRYNDLG PEDAQSLLEY 360 LKKVQAEDPA FFYAVQLDKH EDTVNIFWAD ASARMAYYHF GDAVRFETGY RSNKEHIPIV 420 IFSGVNHHVQ PVIFGCALLV DESEESFVWL FEKWLEAMHV RPPVSFVTEL NQEMAAAAAK 480 VLPDTCHIFC ENHILGTVKE ELHSIYPGLD HFITDLRNCI DGCRIEESFE SSWESVLMQH 540 GFRNNEHLQS LYDIRKRWAP AYTKQSFHAR NLLAQSCENL EKIIDTYFSS KTQLQVAVQQ 600 LEQAICNFHA KEAQADYLTM FQLPALRTAS PVEKQAALVF SRKVFDIFQE QFAESFGYHA 660 ERLEDSMLHK YRLTVDDGDE EAHIVSFSPD QSTVCCSCCL FESCGILCRH ALRVFIIEGV 720 RFLPKAYVLK RWTKHAKSTV TLDNYIELRG YCEDPSTSRY NDLCYDAVKC AKEGSTSTER 780 YKIAKEALCK ALDEIMPTRN IREQNSQNCT TSLRSPVKKL GTSKGTSGKS IKRPAFKNSL 840 MESNGSR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK252774 | 0.0 | AK252774.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf172k23, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169948.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_020169949.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A453KQK0 | 0.0 | A0A453KQK0_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5DL_4ABC24378.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 1e-117 | FAR1-related sequence 3 |
Publications ? help Back to Top | |||
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