 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Traes_5DL_46A3B0DAB1.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
| Family |
TCP |
| Protein Properties |
Length: 275aa MW: 30249.7 Da PI: 6.3521 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Traes_5DL_46A3B0DAB1.1 | genome | IWGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 108.7 | 8.5e-34 | 102 | 184 | 3 | 83 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssas 83
++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai+ l + ss + + e+++ss s+
Traes_5DL_46A3B0DAB1.1 102 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDQLGFDKASKTVDWLLTQSKPAIDRLSSESSRLNAARagEDGMSSLSSV 184
589**********************************************************9955444222333333332222 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 275 aa
Download sequence Send
to blast |
MLPYHPNPHG FWISREPPAQ VPNPASGFAV APPAHLDHQI QHYDHFFPGH GNQFNSETLE 60
AVLMRPRPPA PPPAEMPPAN EARTGAVQAA GTGHARARKR SFRTDRHSKI RTAQGVRDRR 120
MRLSLDVARD FFALQDQLGF DKASKTVDWL LTQSKPAIDR LSSESSRLNA ARAGEDGMSS 180
LSSVEREGRR LKETELAAGS GKGAADVEKA MRARGGGTSV LMEHRREMNG GFMSASMTGG 240
EYYYDLGEMM CINAGECDDD GEYDEDGDFL DGMQY
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP005093 | 6e-78 | AP005093.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1294_G06. |
| GenBank | AP014965 | 6e-78 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
| GenBank | EU702407 | 6e-78 | EU702407.1 Oryza sativa Japonica Group putative TCP transcription factor (DP1) mRNA, complete cds. |
