PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_431CCA490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HSF | ||||||||
Protein Properties | Length: 298aa MW: 32058.1 Da PI: 9.22 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 103.9 | 1.4e-32 | 30 | 121 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 Fl+k+++++e++ ++e+iswse+g+sfvv+++ e+a+++Lp +Fkh nf+SFvRQLn+YgF+kv ++ weF++++F++g Traes_5DL_431CCA490.1 30 FLTKTHQMVEERGTDEVISWSEHGRSFVVWKPVELARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDR---------WEFANENFRRG 108 9*****************************************************************99.........*********** PP XXXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkks 102 +++ll+ i+r+k Traes_5DL_431CCA490.1 109 EQSLLSGIRRRKA 121 **********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 5.85E-32 | 26 | 119 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 4.2E-36 | 26 | 119 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.6E-54 | 26 | 119 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 4.8E-29 | 30 | 119 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-17 | 30 | 53 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-17 | 68 | 80 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 69 | 93 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-17 | 81 | 93 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MAGAAAQQQK GGSGGGGGAV RVGGGGPAPF LTKTHQMVEE RGTDEVISWS EHGRSFVVWK 60 PVELARDLLP LHFKHCNFSS FVRQLNTYGF RKVVPDRWEF ANENFRRGEQ SLLSGIRRRK 120 ATGTTTPQSS KTCGTGVNVA FPPPLPALPP ASASTSGTGN DHSTSSASSP TRPDLSSENE 180 QLRKDNHALA AELALARRHC EELLGFLSRF LDVRQLDLRL LMDEDMQGAA GGARSADQEH 240 CCEKKVKLFG VVLKDASARK RGRCDEAAAS ERSMKMTRIG EPWVGVPSSC PARCGGGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-20 | 16 | 119 | 10 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-20 | 16 | 119 | 10 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-20 | 16 | 119 | 10 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF208549 | 0.0 | KF208549.1 Triticum aestivum heat shock factor B1b (HsfB1b) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020177659.1 | 0.0 | heat stress transcription factor B-1-like | ||||
Swissprot | Q67TP9 | 1e-133 | HSFB1_ORYSJ; Heat stress transcription factor B-1 | ||||
TrEMBL | A0A3B6MT14 | 0.0 | A0A3B6MT14_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453KZ98 | 0.0 | A0A453KZ98_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8CUB1 | 0.0 | M8CUB1_AEGTA; Heat stress transcription factor B-1 | ||||
STRING | EMT31202 | 0.0 | (Aegilops tauschii) | ||||
STRING | Traes_5DL_431CCA490.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 2e-48 | heat shock factor 4 |
Publications ? help Back to Top | |||
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