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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_1C6A8C773.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 299aa MW: 33219.2 Da PI: 4.8196 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.2 | 3.7e-08 | 5 | 54 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwq 45 +++WT eE+ l +++++G g+W++I + R+ ++k++w+ Traes_5DL_1C6A8C773.1 5 KQKWTSEEEAALRAGIARYGVGSWRLILKDDDfrsilSCRSNVDLKDKWR 54 79**************************9988555555566666666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.591 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.59E-14 | 2 | 58 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-12 | 3 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-5 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.5E-7 | 5 | 45 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.76E-18 | 6 | 57 | No hit | No description |
SuperFamily | SSF46785 | 1.03E-12 | 119 | 191 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00526 | 3.8E-6 | 120 | 185 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 4.9E-14 | 121 | 191 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 19.299 | 122 | 190 | IPR005818 | Linker histone H1/H5, domain H15 |
Pfam | PF00538 | 8.8E-8 | 127 | 182 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MGARKQKWTS EEEAALRAGI ARYGVGSWRL ILKDDDFRSI LSCRSNVDLK DKWRNINVFF 60 TESGSMDKGR TAMKKNRATP RRNDHPMAKS TVASDVDDEI VDEQPIASVS SELWNVSIPK 120 KSRSRLNNII LESVKNLNEP TGSHSTTIAK YIEEEYWPPS DFDRMLSANL KDLTTSGELI 180 EVNRKYRIAP APGSMYSEGR SPETLLLEDM QREPQKIESD DIKTFTKSQV DAELAHMITM 240 TAEEAASAAA RAVAEAEALM AEAEAATREA EAAEADAQAA QAFAEAVRNR NVTELMAQS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951930 | 0.0 | JF951930.1 Triticum aestivum clone TaMYB47 MYB-related protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020152791.1 | 0.0 | single myb histone 5-like | ||||
Swissprot | C0HIA3 | 1e-112 | SMH6_MAIZE; Single myb histone 6 | ||||
TrEMBL | A0A3B6MYT2 | 0.0 | A0A3B6MYT2_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453LQ35 | 0.0 | A0A453LQ35_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5DL_1C6A8C773.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1324 | 38 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 3e-55 | telomere repeat binding factor 1 |
Publications ? help Back to Top | |||
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