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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_13706ACAF.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 221aa MW: 25204.4 Da PI: 10.255 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.4 | 1.4e-06 | 66 | 88 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F r nL+ H r H Traes_5DL_13706ACAF.2 66 FVCEVCGKGFQREQNLQLHRRGH 88 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.7 | 0.00079 | 142 | 164 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C k++ +s+ k H +t+ Traes_5DL_13706ACAF.2 142 WKCDKCAKRYAVQSDWKAHSKTC 164 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.61E-8 | 65 | 88 | No hit | No description |
SMART | SM00355 | 0.0027 | 66 | 88 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.1E-6 | 66 | 88 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.759 | 66 | 88 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 68 | 88 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 310 | 107 | 137 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.1E-5 | 130 | 163 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.61E-8 | 137 | 162 | No hit | No description |
SMART | SM00355 | 210 | 142 | 162 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MAAASSAPFF GLSDAQMQPL MAAQQPPAPA AAAPAPKKKR NQPGNPNPDA EVIALSPRSL 60 MATNRFVCEV CGKGFQREQN LQLHRRGHNL PWKLKQKNPK ETRRRVYLCP EPTCVHHDPA 120 RALGDLTGIK KHYCRKHGEK KWKCDKCAKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRY 180 IYHMHAIDIP IRPRSMFQFI FGSYMRVLIL FAVGFWICMS E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 5e-22 | 138 | 188 | 3 | 56 | Zinc finger protein JACKDAW |
5b3h_F | 5e-22 | 138 | 188 | 3 | 56 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK354562 | 0.0 | AK354562.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1008H21. | |||
GenBank | AK357401 | 0.0 | AK357401.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052H09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188927.1 | 1e-134 | protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_020188928.1 | 1e-134 | protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_020188929.1 | 1e-134 | protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_020188931.1 | 1e-134 | protein indeterminate-domain 5, chloroplastic-like | ||||
Swissprot | Q8RWX7 | 1e-101 | IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic | ||||
TrEMBL | A0A3B6MWR0 | 1e-132 | A0A3B6MWR0_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A3B6MY25 | 1e-133 | A0A3B6MY25_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453LL54 | 1e-132 | A0A453LL54_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5DL_13706ACAF.2 | 1e-167 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14580.2 | 3e-98 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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