PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_030E64B15.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 933aa MW: 106289 Da PI: 7.7799 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 77.3 | 3e-24 | 158 | 244 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY +YA ++GF+vrk s+k+ n+ +++r +vCskeg+r ++ ++ + +++raetrtgC+a+++vk +++gk++vt+++ +HnH+ Traes_5DL_030E64B15.2 158 EFYVSYAGTAGFNVRKGCSEKT-ANNVTKSRAYVCSKEGFRPKSFTA--EPKKQRAETRTGCEAHMTVKITTSGKYVVTECVADHNHD 242 6*****************9999.66669*************999877..9999**********************************9 PP FAR1 89 la 90 l Traes_5DL_030E64B15.2 243 LE 244 95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-21 | 158 | 244 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.2E-24 | 344 | 438 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 6.3E-6 | 612 | 656 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 10.076 | 612 | 659 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 8.3E-7 | 634 | 661 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 933 aa Download sequence Send to blast |
MEKEVEVKEK RGRGRPRKAV TEGNALQACV STDLGVTASQ CAVDERKKIL NKYLSKRQSR 60 PASGRPAKII SRQALAERRK RGDGGRFLAS DGPLSPQLPL ERRSKRLEKQ NLQNEKKPES 120 KEDEIVEAEQ DPETEVVAGP GGEPKVGMVF LNEDKAYEFY VSYAGTAGFN VRKGCSEKTA 180 NNVTKSRAYV CSKEGFRPKS FTAEPKKQRA ETRTGCEAHM TVKITTSGKY VVTECVADHN 240 HDLEAPVVDI QILRSQKLLA KLQQPPDPPK VVLIPNDYKN YVRTRHTTDM QLGDARAISE 300 YLQRMKGENP SFFCSIQVDE DDQFRNVFWA DVKSVMDFNY FGDVVCVDTR YSISDYCRPL 360 LLFIGVNHHK QPTIFGTAFI YDESVESFKW LFETFKSAMS GKQPRTVLTD RSTAISDAVA 420 SAWPGTAHRF SLLHLYQNAT KVLSDTFQGS ETFAHDFSRS LYDYEEEGDF LSSWEILLAK 480 YNLKDNKWLS KLYEDRERWA LPYGRDIFCA DIAATLRSDN MDAILTGVLK TEIDLPYFFN 540 RYDKFLEEKR LAEQEADYLG VQMTQRVPPL RLLWQAANTY TPALFELFRL EFELVLACMV 600 YCCGEIGPIS EYEVTVKNRP QVHFVRFDSS EYMVLCSCKK FEFVGLPCCH ALKVLEIKNI 660 KELPPQYILK RWRKDAQSES PKENFGFAAV DEDPKFTMSK RHNSLYRTLY KVAAKAAENI 720 EGQRFMESQY DQLLEQVELL LQAKLHDKPS LSTIMRSQQP NLPQNDTSNS EPRRASSKKN 780 KNVENRRQQQ SPLESSKKKK GRQAVAGLVE PEEAELPLRV LAPTISNDIP NHMSTPTNQF 840 LAPSHLMQAP YVTQQFGLNS LQGFSGMSPF GQEQSHVHLQ QPHLQQPPFH SGPQMHQAPP 900 PDIQSLQFLS SNPQLGHQTT DQGQYTIPVW DFL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 9 | 17 | KRGRGRPRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360042 | 0.0 | AK360042.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1108P13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020187513.1 | 0.0 | protein FAR1-RELATED SEQUENCE 7-like isoform X1 | ||||
TrEMBL | A0A453LY21 | 0.0 | A0A453LY21_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5DL_030E64B15.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-104 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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