PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5DL_030E64B15.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 933aa MW: 106289 Da PI: 7.7799

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5DL_030E64B15.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.3	3e-24	158	244	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY +YA ++GF+vrk s+k+ n+ +++r +vCskeg+r ++ ++ + +++raetrtgC+a+++vk +++gk++vt+++ +HnH+ Traes_5DL_030E64B15.2 158 EFYVSYAGTAGFNVRKGCSEKT-ANNVTKSRAYVCSKEGFRPKSFTA--EPKKQRAETRTGCEAHMTVKITTSGKYVVTECVADHNHD 242 6***************9999.66669*********999877..9999********************************9 PP FAR1 89 la 90 l Traes_5DL_030E64B15.2 243 LE 244 95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-21	158	244	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.2E-24	344	438	IPR018289	MULE transposase domain
Pfam	PF04434	6.3E-6	612	656	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.076	612	659	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.3E-7	634	661	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 933 aa Download sequence Send to blast
MEKEVEVKEK RGRGRPRKAV TEGNALQACV STDLGVTASQ CAVDERKKIL NKYLSKRQSR 60 PASGRPAKII SRQALAERRK RGDGGRFLAS DGPLSPQLPL ERRSKRLEKQ NLQNEKKPES 120 KEDEIVEAEQ DPETEVVAGP GGEPKVGMVF LNEDKAYEFY VSYAGTAGFN VRKGCSEKTA 180 NNVTKSRAYV CSKEGFRPKS FTAEPKKQRA ETRTGCEAHM TVKITTSGKY VVTECVADHN 240 HDLEAPVVDI QILRSQKLLA KLQQPPDPPK VVLIPNDYKN YVRTRHTTDM QLGDARAISE 300 YLQRMKGENP SFFCSIQVDE DDQFRNVFWA DVKSVMDFNY FGDVVCVDTR YSISDYCRPL 360 LLFIGVNHHK QPTIFGTAFI YDESVESFKW LFETFKSAMS GKQPRTVLTD RSTAISDAVA 420 SAWPGTAHRF SLLHLYQNAT KVLSDTFQGS ETFAHDFSRS LYDYEEEGDF LSSWEILLAK 480 YNLKDNKWLS KLYEDRERWA LPYGRDIFCA DIAATLRSDN MDAILTGVLK TEIDLPYFFN 540 RYDKFLEEKR LAEQEADYLG VQMTQRVPPL RLLWQAANTY TPALFELFRL EFELVLACMV 600 YCCGEIGPIS EYEVTVKNRP QVHFVRFDSS EYMVLCSCKK FEFVGLPCCH ALKVLEIKNI 660 KELPPQYILK RWRKDAQSES PKENFGFAAV DEDPKFTMSK RHNSLYRTLY KVAAKAAENI 720 EGQRFMESQY DQLLEQVELL LQAKLHDKPS LSTIMRSQQP NLPQNDTSNS EPRRASSKKN 780 KNVENRRQQQ SPLESSKKKK GRQAVAGLVE PEEAELPLRV LAPTISNDIP NHMSTPTNQF 840 LAPSHLMQAP YVTQQFGLNS LQGFSGMSPF GQEQSHVHLQ QPHLQQPPFH SGPQMHQAPP 900 PDIQSLQFLS SNPQLGHQTT DQGQYTIPVW DFL

Sequence ? help Back to Top

Protein Sequence Length: 933 aa Download sequence Send to blast

MEKEVEVKEK RGRGRPRKAV TEGNALQACV STDLGVTASQ CAVDERKKIL NKYLSKRQSR  60
PASGRPAKII SRQALAERRK RGDGGRFLAS DGPLSPQLPL ERRSKRLEKQ NLQNEKKPES  120
KEDEIVEAEQ DPETEVVAGP GGEPKVGMVF LNEDKAYEFY VSYAGTAGFN VRKGCSEKTA  180
NNVTKSRAYV CSKEGFRPKS FTAEPKKQRA ETRTGCEAHM TVKITTSGKY VVTECVADHN  240
HDLEAPVVDI QILRSQKLLA KLQQPPDPPK VVLIPNDYKN YVRTRHTTDM QLGDARAISE  300
YLQRMKGENP SFFCSIQVDE DDQFRNVFWA DVKSVMDFNY FGDVVCVDTR YSISDYCRPL  360
LLFIGVNHHK QPTIFGTAFI YDESVESFKW LFETFKSAMS GKQPRTVLTD RSTAISDAVA  420
SAWPGTAHRF SLLHLYQNAT KVLSDTFQGS ETFAHDFSRS LYDYEEEGDF LSSWEILLAK  480
YNLKDNKWLS KLYEDRERWA LPYGRDIFCA DIAATLRSDN MDAILTGVLK TEIDLPYFFN  540
RYDKFLEEKR LAEQEADYLG VQMTQRVPPL RLLWQAANTY TPALFELFRL EFELVLACMV  600
YCCGEIGPIS EYEVTVKNRP QVHFVRFDSS EYMVLCSCKK FEFVGLPCCH ALKVLEIKNI  660
KELPPQYILK RWRKDAQSES PKENFGFAAV DEDPKFTMSK RHNSLYRTLY KVAAKAAENI  720
EGQRFMESQY DQLLEQVELL LQAKLHDKPS LSTIMRSQQP NLPQNDTSNS EPRRASSKKN  780
KNVENRRQQQ SPLESSKKKK GRQAVAGLVE PEEAELPLRV LAPTISNDIP NHMSTPTNQF  840
LAPSHLMQAP YVTQQFGLNS LQGFSGMSPF GQEQSHVHLQ QPHLQQPPFH SGPQMHQAPP  900
PDIQSLQFLS SNPQLGHQTT DQGQYTIPVW DFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	9	17	KRGRGRPRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK360042	0.0	AK360042.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1108P13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187513.1	0.0	protein FAR1-RELATED SEQUENCE 7-like isoform X1
TrEMBL	A0A453LY21	0.0	A0A453LY21_AEGTS; Uncharacterized protein
STRING	Traes_5DL_030E64B15.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-104	FAR1-related sequence 5

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]