PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_F9D2C42AB.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CPP
Protein Properties Length: 282aa    MW: 32336.6 Da    PI: 7.8294
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_F9D2C42AB.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.81.2e-143873439
                    TCR  4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39
                           ++C+Ckks ClkkYC+C++ g+ Cs +CkC+dCkN 
  Traes_5BS_F9D2C42AB.1 38 RKCTCKKSGCLKKYCDCYQGGAGCSINCKCDDCKNP 73
                           79*********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163415.44175IPR005172CRC domain
SMARTSM011141.7E-113776IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.8E-113872IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MVFNRIHHQA CLCKLFDQQR LVKIQREFAR YQMDFFRRKC TCKKSGCLKK YCDCYQGGAG  60
CSINCKCDDC KNPYGKKVGV ILDGKSILAT PTPGPTPIER NGTEVISSDD DDDDEDDYYM  120
NRPLSPIPPS PVSRESSFQQ ETLVGVEVHT VNGHLYPKPL TQVRPETWQL SRRPAEEARG  180
EQWRYMRRPS EDGTSDAMEG HADPKFHHQR DNNNSKQRES PADNRFSIPR CIEVMNGMAD  240
LSPVDKSLAP DVFLDPSNRE IFLSLSVDIR TMWLKRKMRS LV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3754080.0AK375408.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3093G12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189112.10.0protein tesmin/TSO1-like CXC 5
TrEMBLA0A3B6LGY50.0A0A3B6LGY5_WHEAT; Uncharacterized protein
TrEMBLA0A446TVY60.0A0A446TVY6_TRITD; Uncharacterized protein
TrEMBLA0A446TW070.0A0A446TW07_TRITD; Uncharacterized protein
STRINGTraes_5BS_F9D2C42AB.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP96102834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.16e-18TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]