PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BS_F1DE20B4B.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NF-YA | ||||||||
Protein Properties | Length: 339aa MW: 36768.4 Da PI: 9.0015 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 99.7 | 2.9e-31 | 174 | 230 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d+p+YVNaKQy++Il+RR +Rak+e+e++l k+rkpylheSRh hA+rR+RgsgGrF Traes_5BS_F1DE20B4B.1 174 DAPIYVNAKQYEGILRRRRARAKAEKENRL-VKARKPYLHESRHLHAMRRARGSGGRF 230 68****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.8E-35 | 172 | 233 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.01 | 173 | 233 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.7E-28 | 176 | 230 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.3E-23 | 176 | 198 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 178 | 198 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 2.3E-23 | 207 | 230 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MMSFKNHHEG FAGQQLLAAA AAAASQVSGG APLPWWVGSQ LLYGEPMGHG KAPPAVPMSM 60 SPPEDACRDG QFQVVPRAQA LLDAVPLPMG ERGIPEALKF SMAHGKGGNS SEHSAPITLQ 120 SPFTEYNDHF ELGLGQSVIS SNYYSDQQYG LLSSYGMRSA SSGRMLIPLN MPADAPIYVN 180 AKQYEGILRR RRARAKAEKE NRLVKARKPY LHESRHLHAM RRARGSGGRF LNTKKETNGK 240 DTGVGSKAMA GNPLMRPAAS LSSEIQHSEQ GNRSSVSSLS GSEVTSLYDH EDVDHYHNFE 300 HLRTHFFTPL PSIMDGEHGA GNPFKWAAAS DGCCNLLKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-17 | 174 | 238 | 2 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM078757 | 0.0 | KM078757.1 Triticum aestivum CCAAT-binding transcription factor B (NFYA-B6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188697.1 | 0.0 | nuclear transcription factor Y subunit A-2-like | ||||
Refseq | XP_020188698.1 | 0.0 | nuclear transcription factor Y subunit A-2-like | ||||
Refseq | XP_020188699.1 | 0.0 | nuclear transcription factor Y subunit A-2-like | ||||
Refseq | XP_020188700.1 | 0.0 | nuclear transcription factor Y subunit A-2-like | ||||
Refseq | XP_020188701.1 | 0.0 | nuclear transcription factor Y subunit A-2-like | ||||
TrEMBL | A0A3B6LFI1 | 0.0 | A0A3B6LFI1_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5BS_F1DE20B4B.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2307 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05690.1 | 1e-28 | nuclear factor Y, subunit A2 |
Publications ? help Back to Top | |||
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