PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 743aa MW: 81993.5 Da PI: 5.45

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BS_ED54C58C5.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	350.7	2.3e-107	365	737	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 l++lL++cA+ v+++d + a++lL++++ +a pdgd +qRla++f+e+L+arla+++ + ++l +++ s ++ l+a++l+ + Traes_5BS_ED54C58C5.1 365 LRTLLIHCAQSVATDDRRSATELLKQIKLHARPDGDGTQRLAHCFAEGLQARLAGTGGLVHQSLMATRIS---AVDMLKAYQLYMAAI 449 6789*************************************************888888777777776...9********** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174 + k+s+l N++I++a g++++HiiD++i++G+QWp++l+ +++Rp+gpp++RiTg++ p++g +e++eetg+rL+k+A+e++v Traes_5BS_ED54C58C5.1 450 CFKKVSFLFSNSTIYNASLGKKKIHIIDYGIQYGFQWPCFLRRISTRPGGPPNVRITGIDLPQPGfrPTERIEETGRRLKKYAHEFNV 537 ************************************************************9******************* PP GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 pfe++++++ ++e+l+ e+L+++p+E+l+Vn+ +q ++l+desv les+rd vLk +++++P+ ++++ + + +++ F++rf e l Traes_5BS_ED54C58C5.1 538 PFEYRAIATAKMESLRKEDLKIDPDEVLIVNSLFQFKNLMDESVVLESPRDVVLKNIRKMRPHTFIHAIVNGSFSAPFFVTRFREVLF 625 **9999************************************************************************** PP GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350 yysalfd l+++ pr++e+r+ +E+ +lgr++ nv+aceg++r+er et+++W+ r ++aG+k +pl+ ++ + a+ +++++ + + Traes_5BS_ED54C58C5.1 626 YYSALFDVLDTTTPRDNEQRMLIEQNILGRAALNVIACEGTDRVERPETYKQWQVRNQRAGLKLLPLNPEVIELARDKVKNCYHKDFV 713 *******************************************************************************889 PP GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374 ++ ++++l++gWk+r L+++S W+ Traes_5BS_ED54C58C5.1 714 IDIDQHWLLQGWKGRILYAISTWT 737 ***********************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.353	339	717	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.0E-105	365	737	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 743 aa Download sequence Send to blast
MGSSSYLPHD TDFSPYLPAD MGSPTADDPS LNLYLSDLIP GSPSEYLDLP PTPHHEQEHQ 60 KPSPDGHGGG VGGGGGDSPS STPEDLVLPF ISRILMEEDI DDKFFYDFPD NPALIEAQQP 120 FLEILSDPSS NSTSDDSNNR AVSPCSPSDA SVGTAAQLPP TPAAVDSYDR FQFEPVDLDP 180 AAFFGGGANS DLMSSAFLKG MQEANKFLPS QDKLVIDLEA SSGQFFKGVE EGNKFLPRED 240 KLVAGFNGHA APAPAPVVLS VKKEEAVDAV SANSGGGRGR KNPYHDDELE QEGGRSSKQS 300 ALGDDVSARE MFDRMLMPSD EMCIVQMQNL RIAMQEAVAK NDSGGGKGAN GKGRGRRGGS 360 DVVDLRTLLI HCAQSVATDD RRSATELLKQ IKLHARPDGD GTQRLAHCFA EGLQARLAGT 420 GGLVHQSLMA TRISAVDMLK AYQLYMAAIC FKKVSFLFSN STIYNASLGK KKIHIIDYGI 480 QYGFQWPCFL RRISTRPGGP PNVRITGIDL PQPGFRPTER IEETGRRLKK YAHEFNVPFE 540 YRAIATAKME SLRKEDLKID PDEVLIVNSL FQFKNLMDES VVLESPRDVV LKNIRKMRPH 600 TFIHAIVNGS FSAPFFVTRF REVLFYYSAL FDVLDTTTPR DNEQRMLIEQ NILGRAALNV 660 IACEGTDRVE RPETYKQWQV RNQRAGLKLL PLNPEVIELA RDKVKNCYHK DFVIDIDQHW 720 LLQGWKGRIL YAISTWTAND ASS

Sequence ? help Back to Top

Protein Sequence Length: 743 aa Download sequence Send to blast

MGSSSYLPHD TDFSPYLPAD MGSPTADDPS LNLYLSDLIP GSPSEYLDLP PTPHHEQEHQ  60
KPSPDGHGGG VGGGGGDSPS STPEDLVLPF ISRILMEEDI DDKFFYDFPD NPALIEAQQP  120
FLEILSDPSS NSTSDDSNNR AVSPCSPSDA SVGTAAQLPP TPAAVDSYDR FQFEPVDLDP  180
AAFFGGGANS DLMSSAFLKG MQEANKFLPS QDKLVIDLEA SSGQFFKGVE EGNKFLPRED  240
KLVAGFNGHA APAPAPVVLS VKKEEAVDAV SANSGGGRGR KNPYHDDELE QEGGRSSKQS  300
ALGDDVSARE MFDRMLMPSD EMCIVQMQNL RIAMQEAVAK NDSGGGKGAN GKGRGRRGGS  360
DVVDLRTLLI HCAQSVATDD RRSATELLKQ IKLHARPDGD GTQRLAHCFA EGLQARLAGT  420
GGLVHQSLMA TRISAVDMLK AYQLYMAAIC FKKVSFLFSN STIYNASLGK KKIHIIDYGI  480
QYGFQWPCFL RRISTRPGGP PNVRITGIDL PQPGFRPTER IEETGRRLKK YAHEFNVPFE  540
YRAIATAKME SLRKEDLKID PDEVLIVNSL FQFKNLMDES VVLESPRDVV LKNIRKMRPH  600
TFIHAIVNGS FSAPFFVTRF REVLFYYSAL FDVLDTTTPR DNEQRMLIEQ NILGRAALNV  660
IACEGTDRVE RPETYKQWQV RNQRAGLKLL PLNPEVIELA RDKVKNCYHK DFVIDIDQHW  720
LLQGWKGRIL YAISTWTAND ASS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-43	369	736	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK357996	0.0	AK357996.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1066L11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020160240.1	0.0	scarecrow-like protein 34
TrEMBL	A0A3B6KDQ0	0.0	A0A3B6KDQ0_WHEAT; Uncharacterized protein
STRING	Traes_5BS_ED54C58C5.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-160	SCARECROW-like 14

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]