PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_E5403F537.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 618aa    MW: 65742 Da    PI: 6.1721
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_E5403F537.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.1e-06222243526
                            --SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                            +C+ f ++  C++Gd C +aHg
  Traes_5BS_E5403F537.1 222 PCPEFKKGAGCRRGDMCEYAHG 243
                            8******88************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.82E-1025135IPR020683Ankyrin repeat-containing domain
PfamPF127962.5E-652124IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.8E-1154141IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.0956127IPR020683Ankyrin repeat-containing domain
CDDcd002042.24E-558132No hitNo description
PROSITE profilePS5008810.20592127IPR002110Ankyrin repeat
SMARTSM003569.8E-4217244IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4220244IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.258222245IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.925253277IPR000571Zinc finger, CCCH-type
SMARTSM0035687253276IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MWEASEYDGV DVAAVSARLL ELVADDDVTA LVDLLAAHPL LADEPAPWYS PARGAEPMTP  60
LMVAAAYGSL ACLDALLSPP HLADPNRASA SSLSTPLHLA AAGGAPSAPT TVSRLLAAGA  120
DPTLLDHLHR RPSDLVALPP NSLPLKNHIL SLLGARKEWP PDPSLPDIKN GAYASDDFRM  180
YSFKVRACSR AYSHDWTECP FVHPGENARR RDPRKYHYSC VPCPEFKKGA GCRRGDMCEY  240
AHGVFESWLH PAQYRTRLCK DGVGCARRVC FFAHTPEELR PLYVSTGSAV PSPRGAMEMA  300
AMGMGLSSPG SSFTPPLSPS GGGSGMAWPQ PNLPALCLPG SAGNLHLSRL RTSLSARAMA  360
VDELLASGDY DNHLGSPASV RSARGKALVP SNLDELFSAE MAASHSPRYA DQGGAAFSPT  420
HKAAFLNQFQ QHQSLLSPRA AATPEPVSPM SSRLLAALAQ REMMQQQTLR SMSSRDLGSS  480
APLLVGSPVV GSSWSKWGLP SGTPDWGADN DELGRLKRSS SFDLRSGANT DEPDLSWVNT  540
LVKEPTPEKS STNGTMATES IGILGRSASH HESIAGDDSA ILGRTANHRE GIIDGEEDAA  600
TGVIGGWLEQ LQLDEMVV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3649400.0AK364940.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2029J17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177942.10.0zinc finger CCCH domain-containing protein 67-like
SwissprotQ2QPW20.0C3H67_ORYSJ; Zinc finger CCCH domain-containing protein 67
TrEMBLA0A446TZD40.0A0A446TZD4_TRITD; Uncharacterized protein
STRINGTraes_5BS_E5403F537.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-158CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]