PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_B2CD001D1.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bZIP
Protein Properties Length: 299aa    MW: 32594.2 Da    PI: 5.0166
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_B2CD001D1.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.47.4e-14112161860
                            HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1   8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                            +r+ +NRe+ArrsR+RK+a +   e  v +L a N +L k+l  +++++   k
  Traes_5BS_B2CD001D1.2 112 KRMLSNRESARRSRKRKQAHQNDIESQVTQLRADNASLLKRLTDMTQKY---K 161
                            8**********************************99985555555544...4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.0E-12105169IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.8E-12110161No hitNo description
SuperFamilySSF579596.25E-11111160No hitNo description
PfamPF001705.0E-11112161IPR004827Basic-leucine zipper domain
PROSITE patternPS000360112127IPR004827Basic-leucine zipper domain
CDDcd147021.21E-16112160No hitNo description
PROSITE profilePS5021710.105112162IPR004827Basic-leucine zipper domain
PfamPF124985.3E-20176279IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MECSGDEVVE LNCARAGGDP GEYAAVLKRK LQLYCAAVAK TMEAKPQESS LNCLNSQASD  60
TSPLVSQASF DGDGTVVQGK PANSCTSKEQ SDDDDGDLEE NTDPLNGSGQ VKRMLSNRES  120
ARRSRKRKQA HQNDIESQVT QLRADNASLL KRLTDMTQKY KEAFLGNRNL TVDIETMRRK  180
VNIAEEAVRR VTGASLMFST TSNRAPLASC VSVAASADAA PAEESMSHFL QGLLEDDMIK  240
HDLSEVATPL PNGEEMTSRP APLRRVASLE NLQKRIHRDS VHSEDTSIFS DHEVPANAQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121127RRSRKRK
2121128RRSRKRKQ
3123128SRKRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2515890.0AK251589.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf118p04, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183207.10.0light-inducible protein CPRF2-like isoform X1
TrEMBLA0A446TVN90.0A0A446TVN9_TRITD; Uncharacterized protein
STRINGTraes_5BS_B2CD001D1.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75952943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.22e-27bZIP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]