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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Traes_5BS_A19FD8E34.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family |
M-type_MADS |
Protein Properties |
Length: 57aa MW: 6557.62 Da PI: 10.0428 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Traes_5BS_A19FD8E34.1 | genome | IWGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 88.6 | 3.4e-28 | 13 | 57 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
krien++ rqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+
Traes_5BS_A19FD8E34.1 13 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGR 57
79****************************************995 PP
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 5e-18 | 5 | 57 | 1 | 53 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 5e-18 | 5 | 57 | 1 | 53 | Myocyte-specific enhancer factor 2B |
1tqe_R | 5e-18 | 5 | 57 | 1 | 53 | Myocyte-specific enhancer factor 2B |
1tqe_S | 5e-18 | 5 | 57 | 1 | 53 | Myocyte-specific enhancer factor 2B |
6c9l_A | 5e-18 | 5 | 57 | 1 | 53 | Myocyte-specific enhancer factor 2B |
6c9l_B | 5e-18 | 5 | 57 | 1 | 53 | Myocyte-specific enhancer factor 2B |
6c9l_C | 5e-18 | 5 | 57 | 1 | 53 | Myocyte-specific enhancer factor 2B |
6c9l_D | 5e-18 | 5 | 57 | 1 | 53 | Myocyte-specific enhancer factor 2B |
6c9l_E | 5e-18 | 5 | 57 | 1 | 53 | Myocyte-specific enhancer factor 2B |
6c9l_F | 5e-18 | 5 | 57 | 1 | 53 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM502864 | 1e-90 | AM502864.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM3A (WM3A gene). |
GenBank | BT008947 | 1e-90 | BT008947.1 Triticum aestivum clone wdk1c.pk007.n22:fis, full insert mRNA sequence. |
GenBank | DQ512349 | 1e-90 | DQ512349.1 Triticum aestivum MADS-box transcription factor TaAGL31 (AGL31) mRNA, complete cds. |
GenBank | DQ512364 | 1e-90 | DQ512364.1 Triticum aestivum MADS-box transcription factor TaAGL9 (AGL9) mRNA, complete cds. |
GenBank | KF761668 | 1e-90 | KF761668.1 Triticum aestivum cultivar Triple Dirk F-Japan line MADS-box transcription factor AGL31 (AGL31) gene, exons 1, 2, and 5 through 7, promoter region and partial cds. |
GenBank | KF761669 | 1e-90 | KF761669.1 Triticum aestivum cultivar Hayakomugi MADS-box transcription factor AGL31 (AGL31) gene, exons 1, 2, and 5 through 7, promoter region and partial cds. |
GenBank | KF761670 | 1e-90 | KF761670.1 Triticum aestivum cultivar Triple Dirk C line MADS-box transcription factor AGL31 (AGL31) gene, exons 1, 2, and 5 through 7, promoter region and partial cds. |
GenBank | KF761671 | 1e-90 | KF761671.1 Triticum aestivum cultivar Chinese Spring Synthetic 5402 line MADS-box transcription factor AGL31 (AGL31) gene, exons 1, 2, and 5 through 7, promoter region and partial cds. |
Publications
? help Back to Top |
- Kyozuka J,Shimamoto K
Ectopic expression of OsMADS3, a rice ortholog of AGAMOUS, caused a homeotic transformation of lodicules to stamens in transgenic rice plants. Plant Cell Physiol., 2002. 43(1): p. 130-5 [PMID:11828031] - Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Brenchley R, et al.
Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]
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