PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_77558D2A3.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TCP
Protein Properties Length: 300aa    MW: 32454.9 Da    PI: 7.282
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_77558D2A3.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP106.25.2e-33361781101
                    TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................sss 68 
                            aag+kdrhsk+ T++g+RdRR+Rls+++a++f+d+qd+LG+d++sk+ieWL+q+a +ai+ l+++                    +  
  Traes_5BS_77558D2A3.2  36 AAGGKDRHSKVVTSRGLRDRRIRLSVQTAIQFYDIQDRLGVDQPSKAIEWLIQAAATAIDGLPSLdcsfafpvaspaaedtaevsT-- 121
                            6899*************************************************************998866663333333322220.. PP

                    TCP  69 saseceaesssssasnsssg......................................kaaksaakskksq 101
                                          s+ s+g                                      +aa + ++++++q
  Traes_5BS_77558D2A3.2 122 --------------SETSKGsvlslangpadndnaahqasaynggsangtfagllhcsNAADKPMQHQHQQ 178
                            ..............222222233344444444444444445555566666666655432222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.8E-3438176IPR005333Transcription factor, TCP
PROSITE profilePS5136930.8193997IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEEADKDRNS CKRLRAVGGG GDSADAWRSF RVARAAAGGK DRHSKVVTSR GLRDRRIRLS  60
VQTAIQFYDI QDRLGVDQPS KAIEWLIQAA ATAIDGLPSL DCSFAFPVAS PAAEDTAEVS  120
TSETSKGSVL SLANGPADND NAAHQASAYN GGSANGTFAG LLHCSNAADK PMQHQHQQQQ  180
PTLAYYAAPG SHIAPMSFEM IPQLTFSQDQ QHCHHHHHHH HASVSFDRST LQSNTVSTPQ  240
WPPSQHPFLM QRFSAAPAEP SPMFPFFLGG NNAAAAAAPA AANAPERRLQ LWDFKEERKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-224498155Putative transcription factor PCF6
5zkt_B2e-224498155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1012153e-77FP101215.1 Phyllostachys edulis cDNA clone: bphylf044o06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183767.10.0transcription factor PCF8-like
RefseqXP_020183769.10.0transcription factor PCF8-like
SwissprotA2ZMR93e-82PCF8_ORYSI; Transcription factor PCF8
TrEMBLA0A3B6LFT10.0A0A3B6LFT1_WHEAT; Uncharacterized protein
TrEMBLA0A446TU560.0A0A446TU56_TRITD; Uncharacterized protein
STRINGTraes_5BS_77558D2A3.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.26e-32TCP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]