PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_3B409615C.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 193aa    MW: 22187 Da    PI: 8.2465
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_3B409615C.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.35.3e-081421752154
                            HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                            k +yp++e++++L +++gL+ +q+ +WF N+R +
  Traes_5BS_3B409615C.1 142 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 175
                            569*****************************87 PP
2ELK23.71.1e-0896114119
                    ELK   1 ELKhqLlrKYsgyLgsLkq 19 
                            ELKh+L+++Y+++L+++++
  Traes_5BS_3B409615C.1  96 ELKHELKQGYREKLVDIRE 114
                            9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037911.8E-12141IPR005541KNOX2
SMARTSM012569.8E-13142IPR005541KNOX2
PfamPF037891.5E-496114IPR005539ELK domain
PROSITE profilePS512139.13296116IPR005539ELK domain
PROSITE profilePS5007111.742116179IPR001356Homeobox domain
SuperFamilySSF466893.12E-16118183IPR009057Homeodomain-like
SMARTSM003894.9E-10118183IPR001356Homeobox domain
CDDcd000863.91E-11119180No hitNo description
Gene3DG3DSA:1.10.10.601.1E-24123180IPR009057Homeodomain-like
PfamPF059201.7E-18136175IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MTHYVLLLCS FKEQLQQHVR VHALEAVMAC WELEQTLQSL TGASPGEGTG ATMSDDEDNP  60
VDSESNMFDG NDVSDGMGFG MLTEGERSLV ERVRQELKHE LKQGYREKLV DIREKMLRKR  120
RAGKLPGDTA STLKAWWQAH AKWPYPTEED KARLVQETGL QLKQINNWFI NQRKRNWHSN  180
PTSSSSDKSK RKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172192RKRNWHSNPTSSSSDKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3539450.0AK353945.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1003P14.
GenBankAK3582110.0AK358211.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1071D15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196997.11e-141homeobox protein knotted-1-like 11 isoform X2
SwissprotQ0E3C31e-126KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLA0A287XVJ11e-140A0A287XVJ1_HORVV; Uncharacterized protein
TrEMBLA0A446YWV21e-140A0A446YWV2_TRITD; Uncharacterized protein
STRINGTraes_5BS_3B409615C.11e-143(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-112KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]