PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5BL_F80E01D65.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HSF

Protein Properties

Length: 124aa MW: 13452.3 Da PI: 10.1165

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BL_F80E01D65.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	72.9	6e-23	30	88	2	60
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 Fl+k+++++e++ ++e+iswse+g+sfvv+++ e+a+++Lp +Fkh nf+SFvRQLn+Y Traes_5BL_F80E01D65.1 30 FLTKTHQMVEERGTDEVISWSEHGRSFVVWKPVELARDLLPLHFKHCNFSSFVRQLNTY 88 9*********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.2E-25	25	89	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	5.7E-23	26	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.58E-21	26	91	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.1E-12	30	53	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.5E-19	30	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-12	68	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-12	81	93	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MAGAAAQQQQ KGGGGGGGVV RVGGGGPAPF LTKTHQMVEE RGTDEVISWS EHGRSFVVWK 60 PVELARDLLP LHFKHCNFSS FVRQLNTYVR IPPSSKHTLS LQYSTSAFAK LITPVCTTDQ 120 RLTT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1hks_A	4e-15	23	88	1	65	HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A	4e-15	23	88	1	65	HEAT-SHOCK TRANSCRIPTION FACTOR
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF208549	1e-141	KF208549.1 Triticum aestivum heat shock factor B1b (HsfB1b) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020177659.1	3e-43	heat stress transcription factor B-1-like
Swissprot	Q67TP9	1e-34	HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBL	A0A446UBR1	3e-86	A0A446UBR1_TRITD; Uncharacterized protein
STRING	Traes_5BL_F80E01D65.1	6e-88	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36990.1	1e-27	heat shock factor 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Grand X, et al. Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns. Plant Biotechnol. J., 2012. 10(7): p. 840-50 [PMID:22607456] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]