PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_DA72CE20D.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 344aa    MW: 36094.6 Da    PI: 5.1061
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_DA72CE20D.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.3e-14127178155
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++++k+L+
  Traes_5BL_DA72CE20D.2 127 QRMTHIAVERNRRKQMNEYLAALRSLMPPS---YAQRGDQASIVGGAINFVKELE 178
                            79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.8E-14125182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.83E-14125182No hitNo description
SuperFamilySSF474597.07E-17126190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.075126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-11132183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MALEAVFSRA AAGLFGRCAM AGTGAGGAWN GLFGGGEGLA GLDGGDWDAA AAAAFSSMLL  60
PQAAFQELDI SAVAAATAPQ EESVGGGEMS AAGVGQDDAA PVAAAATGRR KRRRTRTAKN  120
SEEVESQRMT HIAVERNRRK QMNEYLAALR SLMPPSYAQR GDQASIVGGA INFVKELEQL  180
LQTLETHRRT REPAAAVDGG EAPPPPFANF FTFPQYSMSA TSAPAPPPAT DEGEGADGCP  240
GAEASGSKPS AVADVEVTMV ESHANLRMLS RRRPRQLLRL LVGLQGHRLT VLHLNMSSAG  300
HMVLYSLSLK VEDDCQLTSV DEIATAAHQI VEKIQEEQEL TVAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109113RKRRR
2109114RKRRRT
3127138RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0560419e-87BT056041.1 Zea mays full-length cDNA clone ZM_BFc0157N10 mRNA, complete cds.
GenBankEU9519709e-87EU951970.1 Zea mays clone 1064081 DNA binding protein mRNA, complete cds.
GenBankKJ7280359e-87KJ728035.1 Zea mays clone pUT6179 bHLH transcription factor (bHLH105) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148028.10.0transcription factor bHLH94-like
SwissprotQ9C7T48e-73BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A3B6LNC70.0A0A3B6LNC7_WHEAT; Uncharacterized protein
STRINGTraes_5BL_DA72CE20D.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.18e-45bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]