PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_D934D0099.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | Dof | ||||||||
Protein Properties | Length: 348aa MW: 35855.4 Da PI: 9.7699 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.9 | 4.6e-38 | 79 | 136 | 3 | 60 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++ l+cprC+s+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk + Traes_5BL_D934D0099.1 79 QAPLRCPRCNSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKPRP 136 66789**************************************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 8.4E-32 | 81 | 135 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.096 | 82 | 136 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-25 | 82 | 133 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 84 | 120 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MIQELLGGTA MEQQQLKCAG NAANHHGSLP MALQPISSNP SPTSSSTSSR SSTQRSPSAA 60 SSPQGQGQQG QQGPPGPEQA PLRCPRCNSS NTKFCYYNNY NLTQPRHFCK TCRRYWTKGG 120 ALRNVPIGGG CRKPRPMPAP VAKAQPSSCK SVLGMGVGTA PSLGLGMGVG GGMSWASSPQ 180 TATAQLMALL NSARAGYAGS NMHRLLGLDT MGQLQVLPGS ANGGPGMSPS LWPQATHRPT 240 MPPPPMHLDS HLGMGSLGLG QGQGHHNLLS ALELKPPSSS PSPSSLAASY YSDQLNAVVS 300 NGGAGRPHPY DTPASSYPCS TAMCSLPPSA STVSAAQSSR TVGMDQQP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM084363 | 0.0 | AM084363.1 Hordeum vulgare subsp. vulgare partial dof15 gene for dof zinc finger protein 15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020193682.1 | 0.0 | uncharacterized protein LOC109779469 | ||||
TrEMBL | A0A3B6LTQ0 | 0.0 | A0A3B6LTQ0_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5BL_D934D0099.1 | 0.0 | (Triticum aestivum) | ||||
STRING | Traes_5BL_D934D00991.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7710 | 31 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 3e-31 | OBF binding protein 4 |
Publications ? help Back to Top | |||
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