PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Traes_5BL_CE4CF3B5C.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LBD

Protein Properties

Length: 177aa MW: 19716.5 Da PI: 7.3707

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BL_CE4CF3B5C.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140	8.1e-44	12	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +Ca+Ck+lrr+C++dCv+apyfp e+p++fa vh++FGasnv+k+l++lp +r da+sslvyeA ar+rdPvyG++g i+ lqqq++ Traes_5BL_CE4CF3B5C.1 12 PCASCKLLRRRCTRDCVFAPYFPPEDPHRFATVHRVFGASNVSKMLQELPAAQRADAVSSLVYEATARMRDPVYGCAGAISYLQQQVS 99 7************************************************************************************* PP DUF260 89 qlkaelallkee 100 ql+++la++++e Traes_5BL_CE4CF3B5C.1 100 QLQVQLAVAQAE 111 ******9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.53	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-43	12	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MAGAQTGSSA TPCASCKLLR RRCTRDCVFA PYFPPEDPHR FATVHRVFGA SNVSKMLQEL 60 PAAQRADAVS SLVYEATARM RDPVYGCAGA ISYLQQQVSQ LQVQLAVAQA EILQRINHPS 120 PAAAFHLQEL QQRQVQQQQQ MQMDDDDKAY SSLVMQNDLM STLLLQEACL KKESLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-48	2	114	1	113	LOB family transfactor Ramosa2.1
5ly0_B	2e-48	2	114	1	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP100852	7e-92	FP100852.1 Phyllostachys edulis cDNA clone: bphyst013p01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020183946.1	1e-127	LOB domain-containing protein 12-like
Swissprot	Q8LBW3	7e-63	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A3B6LIE4	1e-127	A0A3B6LIE4_WHEAT; Uncharacterized protein
TrEMBL	A0A446U400	1e-127	A0A446U400_TRITD; Uncharacterized protein
STRING	Traes_5BL_CE4CF3B5C.1	1e-128	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-52	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]