PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_C753673FD.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 279aa    MW: 29949.6 Da    PI: 6.3132
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_C753673FD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12108153454
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            +h e+Er+RRd++N +f  Lr  +P+       +++Ka+ L  A  YI +L
  Traes_5BL_C753673FD.1 108 SHVEAERQRRDKLNRRFCDLRAAVPTV-----SRMDKASLLADAAAYIAEL 153
                            89************************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.989104153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-15106168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-10107153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.30E-12107158No hitNo description
Gene3DG3DSA:4.10.280.105.6E-16108167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-10110159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDDELLSPCS SFFPVSPPSG QYEHPHHQFI EFASCEVPEQ WLLRDVVVPA KSEDAGDLWP  60
AGSLLSTDSE LSELPAASLP ASTESTPRPA PKRRGRKPGP RPEGPTVSHV EAERQRRDKL  120
NRRFCDLRAA VPTVSRMDKA SLLADAAAYI AELRARVARL EDESKQAAAA RWDTNSASLG  180
GGGASFQHFL AGDETVEVRM VGRDAAAVRV TTAAGSAPHA PARLMSALRS LELQVQHACV  240
SRVQGATVQD VVVDVPAALQ HDDGAAIRSA LLQRLRDSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-17107166766Transcription factor MYC2
5gnj_B1e-17107166766Transcription factor MYC2
5gnj_E1e-17107166766Transcription factor MYC2
5gnj_F1e-17107166766Transcription factor MYC2
5gnj_G1e-17107166766Transcription factor MYC2
5gnj_I1e-17107166766Transcription factor MYC2
5gnj_M1e-17107166766Transcription factor MYC2
5gnj_N1e-17107166766Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0065251e-60AP006525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0498F03.
GenBankAP0072541e-60AP007254.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa211K08.
GenBankAP0149651e-60AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126171e-60CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194708.11e-179transcription factor MYC2-like
TrEMBLA0A3B6LQQ40.0A0A3B6LQQ4_WHEAT; Uncharacterized protein
STRINGTraes_5BL_C753673FD.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.13e-14bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]