PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 416aa MW: 45247.4 Da PI: 6.5658

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BL_BA26BA910.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.3	3e-06	177	199	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H Traes_5BL_BA26BA910.1 177 HCCKVCGKGFKRDANLRMHMRGH 199 569******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.6E-5	176	200	No hit	No description
SMART	SM00355	0.011	177	199	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.2E-5	177	199	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.531	177	204	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	178	199	IPR007087	Zinc finger, C2H2
SMART	SM00355	37	225	258	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	39	263	285	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MMCSSDHFDG NNHLYLQPNH QRGTGGMEAC DLERIGHEQS RHGQEAGEHR SDPSAALTTY 60 LTFLEHKIGH LRGILCSTPR HQQQQRAIVS AELRCIIVQL VSIANDLASD SGTGNGVGAA 120 DAFTFERCEE RSPSLSNATH DDSDDHADAG GEEEEEGDGP YEVVQIEKEE ILAPHAHCCK 180 VCGKGFKRDA NLRMHMRGHG DQYKAPGALA RPGSPTPANG RRFFYSCPYA GCKRNREHRD 240 FQPLKTPVCV KNHYRRSHCD KSHVCRRCGV KRFSVLADLR THEKHCGRDR WVCSCGVSFS 300 RKDKLFAHVA IFDGGHTPAL PPSDDEATGH CTAATATTTA IDSIVPGSTQ PLPAGSEALN 360 VVDQSFSGQM LDGLSCSGAK GGIDDVRAKL SSPVGIDFCD FDGFDLLGAV AMDFNF

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MMCSSDHFDG NNHLYLQPNH QRGTGGMEAC DLERIGHEQS RHGQEAGEHR SDPSAALTTY  60
LTFLEHKIGH LRGILCSTPR HQQQQRAIVS AELRCIIVQL VSIANDLASD SGTGNGVGAA  120
DAFTFERCEE RSPSLSNATH DDSDDHADAG GEEEEEGDGP YEVVQIEKEE ILAPHAHCCK  180
VCGKGFKRDA NLRMHMRGHG DQYKAPGALA RPGSPTPANG RRFFYSCPYA GCKRNREHRD  240
FQPLKTPVCV KNHYRRSHCD KSHVCRRCGV KRFSVLADLR THEKHCGRDR WVCSCGVSFS  300
RKDKLFAHVA IFDGGHTPAL PPSDDEATGH CTAATATTTA IDSIVPGSTQ PLPAGSEALN  360
VVDQSFSGQM LDGLSCSGAK GGIDDVRAKL SSPVGIDFCD FDGFDLLGAV AMDFNF

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK366708	0.0	AK366708.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2046B02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020188988.1	0.0	zinc finger protein STAR3-like
Swissprot	Q943I6	3e-91	STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBL	A0A3B6LW59	0.0	A0A3B6LW59_WHEAT; Uncharacterized protein
STRING	Traes_5BL_BA26BA910.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1512	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	8e-82	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]