 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Traes_5BL_B94C45A8F.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
| Family |
TCP |
| Protein Properties |
Length: 291aa MW: 31121.9 Da PI: 4.5811 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Traes_5BL_B94C45A8F.1 | genome | IWGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 87.6 | 2.8e-27 | 1 | 94 | 24 | 110 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg......kaaksaakskksqksa 104
++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ + s+ s+ + ++ + +++s ++q++
Traes_5BL_B94C45A8F.1 1 MPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAILAATGTGTIPANFSsLNISRAASGTTRPAPfpalalHPHHHHHQSPHPQHDM 88
9**********************************************88844444444444333335555542222233333344443 PP
TCP 105 asalnl 110
+++l +
Traes_5BL_B94C45A8F.1 89 STMLGY 94
333333 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 291 aa
Download sequence Send
to blast |
MPALCAARVF QLTRELGHKS DGETIEWLLQ QAEPAILAAT GTGTIPANFS SLNISRAASG 60
TTRPAPFPAL ALHPHHHHHQ SPHPQHDMST MLGYNHLLPP PQEPPQDANS PGSFMRKRYR 120
EDLFKEDDER HDPNAPKARE QQVAPPAAMW AVAPNSAAPG GAFWMLPVSA SQAATARPTE 180
QPMWSFGGGG GSSTVQAPLQ FMSTRVNYPS SGGAMGGMPD TSIGMLAGLN AYDRGVGGTE 240
EEQQQQQQQE QDQQQEMEQQ RDGSGGGNEG EEDGDDDSGG EEEGHGNNSS Q
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK355813 | 0.0 | AK355813.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1026F19. |
