PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 263aa MW: 29505.7 Da PI: 8.9146

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BL_AED68C680.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.7	2e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l ++k +G g+W++ ++ g+ R++k+c++rw +yl Traes_5BL_AED68C680.1 14 KGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	57.5	3.2e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++ Traes_5BL_AED68C680.1 67 RGNFSDEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.407	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	8.07E-29	13	108	IPR009057	Homeodomain-like
SMART	SM00717	6.3E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	8.62E-10	16	61	No hit	No description
PROSITE profile	PS51294	28.575	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-27	65	116	IPR009057	Homeodomain-like
SMART	SM00717	3.3E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-16	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	2.00E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0090379	Biological Process	secondary cell wall biogenesis involved in seed trichome differentiation
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDDRLTAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF SDEEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIRRKLTSRG 120 IDPVTHRAIN SDHAASNITI SFEAAQRDDK GAVFRRDAEP TKVAAAAAAI THVDHHHRSN 180 PHHQMEWGQG KALKCPDLNL DLCISPPSHE DPMVDTKPVV KREAVVGLCF SCSMGLPRSA 240 DCKCSSFMGL RTAMLDFRSI EMK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	6e-28	13	116	26	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF951912	0.0	JF951912.1 Triticum aestivum clone TaMYB29 R2R3-MYB protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020194822.1	0.0	myb-related protein Hv1
Swissprot	P20026	1e-173	MYB1_HORVU; Myb-related protein Hv1
TrEMBL	A0A3B6LQ03	0.0	A0A3B6LQ03_WHEAT; Uncharacterized protein
STRING	Traes_5BL_AED68C680.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	7e-97	myb domain protein 4

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]