PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_96FDFC152.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 276aa    MW: 29765.9 Da    PI: 6.9272
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_96FDFC152.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP67.23.5e-212394178
                           EE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                    SBP 41 rfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
                           rfCqqCsrfh l efDe+krsCr+rL++hn+rrrk+q 
  Traes_5BL_96FDFC152.1  2 RFCQQCSRFHLLAEFDEAKRSCRKRLDGHNRRRRKPQV 39
                           9**********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031105.2E-14136IPR004333Transcription factor, SBP-box
PROSITE profilePS5114119.349137IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.108.3E-11124IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.97E-19242IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MRFCQQCSRF HLLAEFDEAK RSCRKRLDGH NRRRRKPQVD SMNSGSFMTT QQGLYSNSGT  60
RFASFSAPRP EPSWSGIIKS EDSNPYYTTT HQINFAGSSS SYSKEGRRFP FLHEGDQMSF  120
STGAPALEIP PVCQPLLKAV APPPPPPPES SSSNKMFSDG QLTHVLDSDC ALSLLSSPAN  180
SSSVDVSRMV RPSEHIPSVP NLQQFGSSSW FACSQASSAA TGFAAFPGGM DGEQLNAGGA  240
LVPSSNDNEM NCHGIFHVGA DGSSEGTSPS LPFSWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-132365084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11936KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0949132e-44FP094913.1 Phyllostachys edulis cDNA clone: bphyem212i14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178563.11e-177squamosa promoter-binding-like protein 18
SwissprotQ0J0K14e-88SPL18_ORYSJ; Squamosa promoter-binding-like protein 18
TrEMBLA0A446UF630.0A0A446UF63_TRITD; Uncharacterized protein
STRINGTraes_5BL_96FDFC152.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76580.16e-19SBP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]