PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_89636D032.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 126aa    MW: 14294.9 Da    PI: 10.1885
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_89636D032.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF983.8e-31959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krienk+nrqvtfskRr g+lKKA+E+SvLCdaev +iifs++gklye+s+
  Traes_5BL_89636D032.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIIFSTKGKLYEFST 59
                           79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.941161IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.01E-29267IPR002100Transcription factor, MADS-box
CDDcd002651.23E-38266No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-32323IPR002100Transcription factor, MADS-box
PfamPF003198.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-323859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MGRGKVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVGLIIFST KGKLYEFSTE  60
SCDILLAPSY KLINIWRSWA RTCKQILSTS VDPLMESPSG FHGIVLICHE LVVSLFIFTL  120
SFAHPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-20166166MEF2C
5f28_B8e-20166166MEF2C
5f28_C8e-20166166MEF2C
5f28_D8e-20166166MEF2C
6byy_A8e-20166166MEF2 CHIMERA
6byy_B8e-20166166MEF2 CHIMERA
6byy_C8e-20166166MEF2 CHIMERA
6byy_D8e-20166166MEF2 CHIMERA
6bz1_A8e-20166166MEF2 CHIMERA
6bz1_B8e-20166166MEF2 CHIMERA
6bz1_C8e-20166166MEF2 CHIMERA
6bz1_D8e-20166166MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7476021e-105AY747602.1 Triticum turgidum cultivar Langdon clone BAC 1225D16 VRN-B1 (VRN-B1) gene, complete cds.
GenBankAY7476041e-105AY747604.1 Triticum aestivum cultivar Triple Dirk C line VRN-B1 (VRN-B1) gene, complete cds.
GenBankJN8174301e-105JN817430.1 Triticum carthlicum genotype PI 94749 retrotransposon VRN, complete sequence; and VRN-B1 (VRN-B1) gene, complete cds.
GenBankJN8174311e-105JN817431.1 Triticum durum cultivar Lebsock Vrn-B1 (VRN-B1) gene, complete cds.
GenBankKR8168101e-105KR816810.1 Triticum aestivum cultivar Pioneer brand 26R61 (PI612153) VRN-B1 (VRN-B1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotO223281e-34AGL8_SOLCO; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A446UMK72e-87A0A446UMK7_TRITD; Uncharacterized protein
STRINGTraes_5BL_89636D032.13e-88(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-35AGAMOUS-like 8
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]