PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 269aa MW: 28860.7 Da PI: 8.314

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BL_87924B626.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.5	1.1e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +k +G g+W++ ++ g+ R++k+c++rw +yl Traes_5BL_87924B626.1 14 KGAWTKEEDQRLIAHIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	58	2.1e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eEdel++++++ lG++ W++Ia +++ gRt++++k++w+++ Traes_5BL_87924B626.1 67 RGNFTDEEDELIIKLHEFLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.8E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.536	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	2.88E-29	13	108	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.33E-11	16	61	No hit	No description
PROSITE profile	PS51294	27.528	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.0E-28	65	116	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.6E-16	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	7.72E-14	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLIAHIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TDEEDELIIK LHEFLGNKWS LIAGRLPGRT DNEIKNYWNT HVKRKLLARG 120 VDPQTHRPLN AGTAAVQGIH TPSSPAVASG ASPHQLAGGS SCSPDASGHS SDADDSVSLP 180 PSLAGNLGVG MIDLNLSICP PCQPPLSREA DGVLRTGYSE REKICLCLNR LGLHGGEGCS 240 CVGSSSSSSL HPASSGVLRF LDASLFRDP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-30	13	116	26	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF226140	0.0	KF226140.1 Triticum aestivum cultivar RNIL_Sumai3 R2R3-Myb transcription factor (MybFhb5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020201126.1	0.0	myb-related protein 308-like
Swissprot	P81393	8e-94	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A3B6LH51	0.0	A0A3B6LH51_WHEAT; Uncharacterized protein
STRING	Traes_5BL_87924B626.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	3e-87	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]