PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_7A5C5CCCB1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | Dof | ||||||||
Protein Properties | Length: 360aa MW: 35747.5 Da PI: 9.6935 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.8 | 1.2e-38 | 44 | 104 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e lkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GG+lrnvPvGgg+r+nk+++ Traes_5BL_7A5C5CCCB1.1 44 PEPGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGTLRNVPVGGGCRRNKRTK 104 56789*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-37 | 28 | 102 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.3E-32 | 48 | 102 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.441 | 48 | 102 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 50 | 86 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MGSPVALSGA GGGGGGAGGG LTGGAVVRPG SMTDKARMAK IPQPEPGLKC PRCESTNTKF 60 CYFNNYSLTQ PRHFCKTCRR YWTRGGTLRN VPVGGGCRRN KRTKSSKSSS SAASASGGGT 120 SSSTTSSTTT AGGGNGNGST AAGAAGAMMS SQGQGHAQMP FFGSLHPLGA GSGDHYGTGA 180 SRLGFPGLIN SLDPVDYQLG GGGAAAAAMA LSEQWRLPQM QQFPFFGRAD GMHQQQQQMA 240 GLYPFDATDA SGFAGEMMGG VGGSKQLVPG SAGLITQLAS VKMEDNPPSN NSMAGAASAR 300 EFLGLPGNIQ FWGGGNNGAG GNENGGSHSS GTVAPGGAGG GGGWVDQLPG FNSSSSGNIL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM084349 | 0.0 | AM084349.1 Hordeum vulgare subsp. vulgare dof1 gene for dof zinc finger protein 1, exons 1-2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020197596.1 | 1e-178 | dof zinc finger protein DOF2.4-like isoform X1 | ||||
Refseq | XP_020197597.1 | 1e-178 | dof zinc finger protein DOF2.4-like isoform X2 | ||||
TrEMBL | A0A3B6LWQ0 | 0.0 | A0A3B6LWQ0_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446UTX5 | 0.0 | A0A446UTX5_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A446UU11 | 0.0 | A0A446UU11_TRITD; Uncharacterized protein | ||||
STRING | Traes_5BL_7A5C5CCCB.1 | 0.0 | (Triticum aestivum) | ||||
STRING | Traes_5BL_7A5C5CCCB1.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4893 | 29 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37590.1 | 3e-43 | DNA binding with one finger 2.4 |
Publications ? help Back to Top | |||
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