PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5BL_7A5C5CCCB1.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Dof

Protein Properties

Length: 360aa MW: 35747.5 Da PI: 9.6935

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BL_7A5C5CCCB1.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.8	1.2e-38	44	104	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e lkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GG+lrnvPvGgg+r+nk+++ Traes_5BL_7A5C5CCCB1.1 44 PEPGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGTLRNVPVGGGCRRNKRTK 104 56789*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-37	28	102	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.3E-32	48	102	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.441	48	102	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	50	86	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MGSPVALSGA GGGGGGAGGG LTGGAVVRPG SMTDKARMAK IPQPEPGLKC PRCESTNTKF 60 CYFNNYSLTQ PRHFCKTCRR YWTRGGTLRN VPVGGGCRRN KRTKSSKSSS SAASASGGGT 120 SSSTTSSTTT AGGGNGNGST AAGAAGAMMS SQGQGHAQMP FFGSLHPLGA GSGDHYGTGA 180 SRLGFPGLIN SLDPVDYQLG GGGAAAAAMA LSEQWRLPQM QQFPFFGRAD GMHQQQQQMA 240 GLYPFDATDA SGFAGEMMGG VGGSKQLVPG SAGLITQLAS VKMEDNPPSN NSMAGAASAR 300 EFLGLPGNIQ FWGGGNNGAG GNENGGSHSS GTVAPGGAGG GGGWVDQLPG FNSSSSGNIL

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MGSPVALSGA GGGGGGAGGG LTGGAVVRPG SMTDKARMAK IPQPEPGLKC PRCESTNTKF  60
CYFNNYSLTQ PRHFCKTCRR YWTRGGTLRN VPVGGGCRRN KRTKSSKSSS SAASASGGGT  120
SSSTTSSTTT AGGGNGNGST AAGAAGAMMS SQGQGHAQMP FFGSLHPLGA GSGDHYGTGA  180
SRLGFPGLIN SLDPVDYQLG GGGAAAAAMA LSEQWRLPQM QQFPFFGRAD GMHQQQQQMA  240
GLYPFDATDA SGFAGEMMGG VGGSKQLVPG SAGLITQLAS VKMEDNPPSN NSMAGAASAR  300
EFLGLPGNIQ FWGGGNNGAG GNENGGSHSS GTVAPGGAGG GGGWVDQLPG FNSSSSGNIL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM084349	0.0	AM084349.1 Hordeum vulgare subsp. vulgare dof1 gene for dof zinc finger protein 1, exons 1-2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020197596.1	1e-178	dof zinc finger protein DOF2.4-like isoform X1
Refseq	XP_020197597.1	1e-178	dof zinc finger protein DOF2.4-like isoform X2
TrEMBL	A0A3B6LWQ0	0.0	A0A3B6LWQ0_WHEAT; Uncharacterized protein
TrEMBL	A0A446UTX5	0.0	A0A446UTX5_TRITD; Uncharacterized protein
TrEMBL	A0A446UU11	0.0	A0A446UU11_TRITD; Uncharacterized protein
STRING	Traes_5BL_7A5C5CCCB.1	0.0	(Triticum aestivum)
STRING	Traes_5BL_7A5C5CCCB1.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4893	29	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	3e-43	DNA binding with one finger 2.4

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]