PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_6C1EFA808.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | TALE | ||||||||
Protein Properties | Length: 100aa MW: 12006.6 Da PI: 11.113 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.1 | 1.5e-08 | 49 | 82 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + Traes_5BL_6C1EFA808.1 49 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 82 569*****************************87 PP | |||||||
2 | ELK | 31.6 | 3.6e-11 | 3 | 24 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++L+++++E++ Traes_5BL_6C1EFA808.1 3 ELKHELKQGYREKLVDIREEIL 24 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03789 | 5.5E-7 | 3 | 24 | IPR005539 | ELK domain |
SMART | SM01188 | 0.0014 | 3 | 24 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.196 | 3 | 23 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.596 | 23 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.9E-10 | 25 | 90 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.99E-17 | 25 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.47E-8 | 26 | 87 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-25 | 30 | 87 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.8E-19 | 43 | 82 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence Send to blast |
RQELKHELKQ GYREKLVDIR EEILRKRRAG KLPGDTASTL KAWWQAHAKW PYPTEEDKAR 60 LVQETGLQLK QINNWFINQR KRNWHSNPTS SSSDKSKRKR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 99 | RKRNWHSNPTSSSSDKSKRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK358211 | 1e-138 | AK358211.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1071D15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020196997.1 | 4e-67 | homeobox protein knotted-1-like 11 isoform X2 | ||||
Swissprot | Q94LW4 | 5e-67 | KNOSB_ORYSJ; Homeobox protein knotted-1-like 11 | ||||
TrEMBL | A0A446XXI6 | 6e-67 | A0A446XXI6_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A453T5N5 | 6e-67 | A0A453T5N5_AEGTS; Uncharacterized protein | ||||
STRING | Traes_7AL_07431A665.2 | 2e-67 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP564 | 38 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 7e-58 | KNOTTED1-like homeobox gene 3 |
Publications ? help Back to Top | |||
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