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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Traes_5BL_692FEF87A.3 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family |
MYB_related |
Protein Properties |
Length: 300aa MW: 33345.4 Da PI: 4.7609 |
Description |
MYB_related family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Traes_5BL_692FEF87A.3 | genome | IWGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 27.5 | 7.4e-09 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
+++WT eE+ l +++++G g+W++I + R+ ++k++w++
Traes_5BL_692FEF87A.3 5 KQKWTSEEEAALRAGIARYGVGSWRLILKDKDfssilSCRSNVDLKDKWRN 55
79*******************************9**9889*********98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 300 aa
Download sequence Send
to blast |
MGARKQKWTS EEEAALRAGI ARYGVGSWRL ILKDKDFSSI LSCRSNVDLK DKWRNINVFF 60 TESGSMDKER TATKKNRAAP RRNDHPMANS IVASDVDDEI VDEQPIASMS SELWNVSIPK 120 KSRSRLNNII LESVKNLNEP TGSHSTTIAK YIEEEYWPPS EFDRILSANL KDLTTSGELI 180 EVNRKYRIAP APGSMYSEGR SPETLLLEDM QREPQKIESD EIKTPTKSQV DFELADMITM 240 TAKEAASAAA RAIAEAEALM AEAEAATREA EAAEADAQAA QAFAEAVRNR NVTELIMAQS
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Functional Description ? help
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Source |
Description |
UniProt | Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JF951930 | 0.0 | JF951930.1 Triticum aestivum clone TaMYB47 MYB-related protein mRNA, complete cds. |
Publications
? help Back to Top |
- Soderlund C, et al.
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. PLoS Genet., 2009. 5(11): p. e1000740 [PMID:19936069] - Zhang L,Zhao G,Jia J,Liu X,Kong X
Molecular characterization of 60 isolated wheat MYB genes and analysis of their expression during abiotic stress. J. Exp. Bot., 2012. 63(1): p. 203-14 [PMID:21934119] - Brenchley R, et al.
Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]
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