PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HD-ZIP

Protein Properties

Length: 269aa MW: 28884.9 Da PI: 4.4309

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BL_5DE02D63E.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.2	3.3e-19	52	105	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq+++Le+ Fe ++++ e++++LA+ lgL+ rqV vWFqNrRa++k Traes_5BL_5DE02D63E.1 52 KKRRLSAEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWK 105 45689************************************************9 PP
2	HD-ZIP_I/II	133.8	6.1e-43	51	143	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ekkrrls+eqv++LE+sFe e+kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++ydal+ ++++L++++e+L Traes_5BL_5DE02D63E.1 51 EKKRRLSAEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYNALRHSYDALRVDHDALRRDKEALL 138 69************************************************************************************** PP HD-ZIP_I/II 89 eelke 93 +e+k+ Traes_5BL_5DE02D63E.1 139 AEIKD 143 99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.68E-20	40	109	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-20	49	112	IPR009057	Homeodomain-like
SMART	SM00389	1.5E-18	50	111	IPR001356	Homeobox domain
PROSITE profile	PS50071	17.151	51	107	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-16	52	105	IPR001356	Homeobox domain
CDD	cd00086	7.02E-18	52	108	No hit	No description
PRINTS	PR00031	9.1E-6	78	87	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	82	105	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.1E-6	87	103	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.2E-17	107	148	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009637	Biological Process	response to blue light
GO:0030308	Biological Process	negative regulation of cell growth
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0048573	Biological Process	photoperiodism, flowering
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MKRPGGGNPS SLHQMASPND MDYGVVGMEA DGDAEEEMMA CGGGGGCGGG EKKRRLSAEQ 60 VRALERSFEV ENKLEPERKA RLARDLGLQP RQVAVWFQNR RARWKTKQLE RDYNALRHSY 120 DALRVDHDAL RRDKEALLAE IKDLKGKLGD EEAAASFTSV KEEPAASDGP PPAGMGSSDS 180 DSSGVLNDTD ATGATPTEEA PAPEMGTLLG GPGAAGAAAA GHGQMFLHGN FLKVEEDETG 240 FLDDEEPCGG FFADEPPLAW WTEPTDPWK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	82	ERKARLA
2	99	107	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269\|PubMed:10732669, ECO:0000269\|PubMed:18049796}.
UniProt	Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269\|PubMed:10732669, ECO:0000269\|PubMed:18049796}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00051	PBM	Transfer from AT4G40060	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269\|PubMed:17999151, ECO:0000269\|PubMed:18049796}.
UniProt	INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269\|PubMed:17999151, ECO:0000269\|PubMed:18049796}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK354063	0.0	AK354063.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1004L21.
GenBank	AK355887	0.0	AK355887.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1027I19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020148015.1	0.0	homeobox-leucine zipper protein HOX4-like
Swissprot	Q6K498	1e-120	HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4
Swissprot	Q9XH37	1e-120	HOX4_ORYSI; Homeobox-leucine zipper protein HOX4
TrEMBL	A0A3B6LNM0	0.0	A0A3B6LNM0_WHEAT; Uncharacterized protein
TrEMBL	A0A446UCG0	0.0	A0A446UCG0_TRITD; Uncharacterized protein
STRING	Traes_5BL_5DE02D63E.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3009	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65310.2	2e-43	homeobox protein 5

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]