PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 282aa MW: 31116.1 Da PI: 6.9335

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BL_3C4ECAB6D.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.8	5.2e-18	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++q+G+g+W+++++ g+ R+ k+c++rw +yl Traes_5BL_3C4ECAB6D.1 16 KGPWTPEEDIILVSYIQQHGPGNWRSVPENTGLMRCSKSCRLRWTNYL 63 79********************************************97 PP
2	Myb_DNA-binding	47	5.9e-15	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ +++++ ++lG++ W++Ia++++ Rt++++k++w+++l Traes_5BL_3C4ECAB6D.1 69 RGNFTQHEEGIIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 114 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.958	11	67	IPR017930	Myb domain
SuperFamily	SSF46689	2.7E-30	13	110	IPR009057	Homeodomain-like
SMART	SM00717	7.4E-14	15	65	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-16	16	63	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-23	17	70	IPR009057	Homeodomain-like
CDD	cd00167	1.25E-12	18	63	No hit	No description
PROSITE profile	PS51294	18.953	68	118	IPR017930	Myb domain
SMART	SM00717	3.3E-13	68	116	IPR001005	SANT/Myb domain
Pfam	PF00249	4.6E-13	69	114	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-24	71	118	IPR009057	Homeodomain-like
CDD	cd00167	7.55E-10	71	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MGRPPCCDNG GASVKKGPWT PEEDIILVSY IQQHGPGNWR SVPENTGLMR CSKSCRLRWT 60 NYLRPGIKRG NFTQHEEGII IHLQALLGNK WAAIASYLPQ RTDNDIKNYW NTHLKKKVKR 120 LQQQTHPADH FFQHTSTATN AAEQTISMNY YNPSSSNLDS AMQAAMGYPE TTTGNVAPAA 180 MAVSKLFQSW MPKAPSPEMA DYKGMVAMQE FQTDREDGAT ASMTSGHRFS SSEILAGRDE 240 AATATTFSVL ENWLLDDMAP GQAAMDGLMD ISAGCCANPI MF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	5e-26	13	118	24	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269\|PubMed:22018045}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269\|PubMed:22018045}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK110844	1e-137	AK110844.1 Oryza sativa Japonica Group cDNA clone:002-172-B09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020177196.1	0.0	transcription factor MYB30-like
Swissprot	B3VTV7	7e-86	MYB60_VITVI; Transcription factor MYB60
TrEMBL	A0A3B6LXC0	0.0	A0A3B6LXC0_WHEAT; Uncharacterized protein
TrEMBL	A0A446UY39	0.0	A0A446UY39_TRITD; Uncharacterized protein
STRING	Traes_5BL_3C4ECAB6D.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28910.1	3e-80	myb domain protein 30

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]