PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_388501B7C.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 129aa    MW: 13733.5 Da    PI: 11.4568
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_388501B7C.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.0001587109123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C++Cg  F     L  H+r+H
  Traes_5BL_388501B7C.1  87 HRCHICGLEFEMGQALGGHMRRH 109
                            79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.19E-684113No hitNo description
PfamPF139121.9E-1186112IPR007087Zinc finger, C2H2
PROSITE profilePS501579.47387114IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
SSTEIRPPGC PCPSPSRSPS VPWPTAARRC AAAAPTASSC ARRAAARSRR SRRWADTGPA  60
TSVAATGSRA GYDQPATRKT TDQKQAHRCH ICGLEFEMGQ ALGGHMRRHR DEAVATTAQA  120
PPVLLQLFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198416.12e-32zinc finger protein ZAT8-like
TrEMBLA0A3B6LV555e-34A0A3B6LV55_WHEAT; Uncharacterized protein
TrEMBLA0A446UTS25e-34A0A446UTS2_TRITD; Uncharacterized protein
STRINGTraes_5BL_388501B7C.19e-87(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46090.12e-11C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]