PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_2C77A04C2.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 145aa MW: 17037.7 Da PI: 10.3678 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 40.3 | 1.1e-12 | 6 | 69 | 30 | 90 |
FAR1 30 krtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +++f+C +g ree++ +k+r++ + t +gC+a++ +++++dg++ev +++ +H+H+l+ Traes_5BL_2C77A04C2.2 6 WKRFTCAWKGWREEKTVLndhVKKSRKKVKLTSCGCEAMISLRRRDDGNYEVLRFVCQHTHQLV 69 689*********9987666667888889999*******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.0E-10 | 6 | 69 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MVIPVWKRFT CAWKGWREEK TVLNDHVKKS RKKVKLTSCG CEAMISLRRR DDGNYEVLRF 60 VCQHTHQLVS TNKKQFTRTN REVSSELRST FLTCHSIDEP LPKKLAYTNW DQERYPEKLV 120 SDRGSKKLIA FVTMPHTMIT QPSGH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020190907.1 | 2e-27 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_020190908.1 | 2e-27 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_020190909.1 | 2e-27 | protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
TrEMBL | A0A452XTC2 | 4e-28 | A0A452XTC2_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5BL_2C77A04C2.2 | 1e-106 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15006 | 9 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-08 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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