PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_028D02DF6.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 299aa    MW: 32566 Da    PI: 4.5659
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_028D02DF6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.5e-1979133356
                            --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            +++++t+eq+++Le+ Fe+ +r++  e++ eLA++lg+  rqV vWFqNrRa++k
  Traes_5BL_028D02DF6.1  79 RKRRLTAEQVRALERSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWK 133
                            45589*************98**********************************9 PP
2HD-ZIP_I/II122.81.6e-3978171193
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                            e+krrl++eqv++LE+sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+k+kqlE+d++aL++a+d+l + +++L +++++L
  Traes_5BL_028D02DF6.1  78 ERKRRLTAEQVRALERSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWKAKQLEQDFDALRAAHDELLAGRDALLADNHRL 165
                            69*****************9999***************************************************************** PP

            HD-ZIP_I/II  88 reelke 93 
                            r+++++
  Traes_5BL_028D02DF6.1 166 RSQVTS 171
                            **9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.27E-1769137IPR009057Homeodomain-like
PROSITE profilePS5007117.65374135IPR001356Homeobox domain
SMARTSM003896.7E-1777139IPR001356Homeobox domain
PfamPF000461.1E-1679133IPR001356Homeobox domain
CDDcd000861.62E-1679136No hitNo description
Gene3DG3DSA:1.10.10.603.3E-1981142IPR009057Homeodomain-like
PRINTSPR000313.1E-6106115IPR000047Helix-turn-helix motif
PROSITE patternPS000270110133IPR017970Homeobox, conserved site
PRINTSPR000313.1E-6115131IPR000047Helix-turn-helix motif
PfamPF021833.1E-14135177IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MESGRLIFGS AAPCRAAGGG GGQMMLFGGS GSFLGGSPVV AGVEDGRRKR PFLTTVDEEL  60
QLEEEMYGYY GLDEHAPERK RRLTAEQVRA LERSFEEEKR KLEPERKSEL ARRLGIAPRQ  120
VAVWFQNRRA RWKAKQLEQD FDALRAAHDE LLAGRDALLA DNHRLRSQVT SLTEKLQAKE  180
SSEPEGPTAV SGRTDAGVPA VEPKEGYAAC DGAAGLLADF AGGANDSPES NSYLADARSP  240
PSSSDDDCAG AVGGELNSCG FFLPEYAMLD VAAAERGSVQ QGEEEEEEAQ RKYWAWFWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17782ERKRRL
2127135RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568500.0AK356850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1041A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169950.10.0homeobox-leucine zipper protein HOX25-like
SwissprotA3BYC13e-73HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25
TrEMBLA0A3B6LM260.0A0A3B6LM26_WHEAT; Uncharacterized protein
STRINGTraes_5BL_028D02DF6.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127562735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.14e-37homeobox 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]