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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Traes_5AS_7BFB385EF.3 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 254aa MW: 28498.5 Da PI: 9.6756 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Traes_5AS_7BFB385EF.3 | genome | IWGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 96.6 | 1.1e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++ rqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
Traes_5AS_7BFB385EF.3 9 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 59
79***********************************************95 PP
|
| 2 | K-box | 98.5 | 1e-32 | 84 | 175 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96
e + ++++qqe+a+L+ +i++Lq++++hl+G+++++LslkeL+qLe++Lek++ kiR++Knell ++i+++ k+e elq++n +Lr+
Traes_5AS_7BFB385EF.3 84 IEVNAQQYYQQEAARLRHQIQMLQSTNKHLVGDSVGNLSLKELKQLESRLEKGIAKIRARKNELLSSEINYMVKREIELQSDNIDLRT 171
5667899********************************************************************************* PP
K-box 97 klee 100
k++e
Traes_5AS_7BFB385EF.3 172 KIAE 175
*986 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 3.4E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 33.529 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 2.11E-44 | 2 | 74 | No hit | No description |
| SuperFamily | SSF55455 | 1.31E-32 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.7E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.7E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.7E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.7E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 1.6E-24 | 86 | 173 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 14.295 | 89 | 179 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0048283 | Biological Process | indeterminate inflorescence morphogenesis |
| GO:0048481 | Biological Process | plant ovule development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 254 aa
Download sequence Send
to blast |
MGRGRIEIKR IENTTSRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNN 60
SVKATIDRYK KAHACGSTSG VPLIEVNAQQ YYQQEAARLR HQIQMLQSTN KHLVGDSVGN 120
LSLKELKQLE SRLEKGIAKI RARKNELLSS EINYMVKREI ELQSDNIDLR TKIAEEEQRM 180
QQVTIARPSA APELNPFTAL DMKCFFPANL FEAAVQAHAQ AQAQAQAHAQ ASLQLNLGYQ 240
QLAPPGAGDV AHQF
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AM502865 | 0.0 | AM502865.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM3B (WM3B gene). |
| Publications
? help Back to Top |
- Gindullis F,Rose A,Patel S,Meier I
Four signature motifs define the first class of structurally related large coiled-coil proteins in plants.
BMC Genomics, 2002. 3: p. 9
[PMID:11972898] - Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Yamaki S,Satoh H,Nagato Y
Gypsy embryo specifies ovule curvature by regulating ovule/integument development in rice.
Planta, 2005. 222(3): p. 408-17
[PMID:16001259] - Dreni L, et al.
The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice.
Plant J., 2007. 52(4): p. 690-9
[PMID:17877710] - Yamaki S,Nagato Y,Kurata N,Nonomura K
Ovule is a lateral organ finally differentiated from the terminating floral meristem in rice.
Dev. Biol., 2011. 351(1): p. 208-16
[PMID:21146515] - Li H,Liang W,Yin C,Zhu L,Zhang D
Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy.
Plant Physiol., 2011. 156(1): p. 263-74
[PMID:21444646] - Li H, et al.
Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
Plant Cell, 2011. 23(7): p. 2536-52
[PMID:21784949] - Brenchley R, et al.
Analysis of the bread wheat genome using whole-genome shotgun sequencing.
Nature, 2012. 491(7426): p. 705-10
[PMID:23192148]
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