PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 144aa MW: 16407.8 Da PI: 10.1195

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5AS_62CC650D3.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54	3.7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +k +G g+W++ ++ g+ R++k+c++rw +yl Traes_5AS_62CC650D3.1 14 KGAWTKEEDQRLIAHIKDHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	58.1	2e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ eEdel++++++ lG++ W++Ia +++ gRt++++k++w+++ Traes_5AS_62CC650D3.1 67 RGNFSDEEDELIIKLHEFLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.602	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.51E-29	13	108	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	4.5E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	6.87E-11	16	61	No hit	No description
PROSITE profile	PS51294	27.086	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.6E-28	65	116	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-16	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	3.28E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLIAHIK DHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF SDEEDELIIK LHEFLGNKWS LIAGRLPGRT DNEIKNYWNT HVKRKLLARG 120 VDPQTHRPLN AGTTAVQGMH TPSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-30	13	116	26	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF226140	0.0	KF226140.1 Triticum aestivum cultivar RNIL_Sumai3 R2R3-Myb transcription factor (MybFhb5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020201126.1	1e-100	myb-related protein 308-like
Swissprot	P81393	4e-87	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A126CZG4	1e-103	A0A126CZG4_WHEAT; R2R3-Myb transcription factor
TrEMBL	A0A3B6KDG1	1e-102	A0A3B6KDG1_WHEAT; Uncharacterized protein
STRING	Traes_5AS_62CC650D3.1	1e-104	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	1e-88	myb domain protein 6

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]