PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5AS_378F353CF.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YA

Protein Properties

Length: 232aa MW: 25565.5 Da PI: 9.7581

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5AS_378F353CF.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	100.6	1.5e-31	76	132	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d+p+YVNaKQy++Il+RR +Rak+e+e++l k+rkpylheSRh hA+rR+RgsgGrF Traes_5AS_378F353CF.2 76 DAPIYVNAKQYEGILRRRRARAKAEKENRL-VKARKPYLHESRHLHAMRRARGSGGRF 132 68**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.8E-35	74	135	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.01	75	135	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.0E-28	78	132	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.7E-23	78	100	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	80	100	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.7E-23	109	132	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MVHLGSGKGG NSSEHSAPIT LQSPFTEYND HFELGLGQSV ISSNYYSDQQ YGLLSSYGMR 60 SASSGRMLIP LNMPADAPIY VNAKQYEGIL RRRRARAKAE KENRLVKARK PYLHESRHLH 120 AMRRARGSGG RFLNTKKETN GKDTGVGSKA MVGNPLMRSA ASLSSEIQHS EQGNPSSVSS 180 MSGSEVTSLY DHEDVDHYHN FEHLRTHFFT PLPSIMDGEH GAGNPFKWAA AS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-18	76	140	2	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
4g91_A	2e-18	76	134	2	61	HAPB protein
4g92_A	2e-18	76	134	2	61	HAPB protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM078756	0.0	KM078756.1 Triticum aestivum CCAAT-binding transcription factor B (NFYA-A6) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020188697.1	1e-145	nuclear transcription factor Y subunit A-2-like
Refseq	XP_020188698.1	1e-145	nuclear transcription factor Y subunit A-2-like
Refseq	XP_020188699.1	1e-145	nuclear transcription factor Y subunit A-2-like
Refseq	XP_020188700.1	1e-145	nuclear transcription factor Y subunit A-2-like
Refseq	XP_020188701.1	1e-145	nuclear transcription factor Y subunit A-2-like
Swissprot	Q9M9X4	2e-37	NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBL	A0A446SNI5	1e-171	A0A446SNI5_TRITD; Uncharacterized protein
STRING	Traes_5AS_378F353CF.2	1e-171	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2307	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05690.1	4e-29	nuclear factor Y, subunit A2

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Nasim Z,Fahim M,Ahn JH Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay. Front Plant Sci, 2017. 8: p. 191 [PMID:28261246] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]