PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AL_EB97D69D7.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | YABBY | ||||||||
Protein Properties | Length: 186aa MW: 21052 Da PI: 9.4738 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 234.5 | 2.4e-72 | 6 | 161 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92 +e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCtsllsvnl+ q ++++h +e+ k ++ +++ n+ + ++ Traes_5AL_EB97D69D7.2 6 APPEHVCYVHCNFCNTILAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLIQSPPVQDH--------SQENFKAHNISFRGNYPDYGTS 85 679******************************************************9........7899999*********999999 PP YABBY 93 stsvssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+++ +++ +++++e++ ++ p PekrqrvPsaynrfikeei+rik++nPdishreafs+aaknWahfP+ihfgl Traes_5AL_EB97D69D7.2 86 SKYRMPMMFsTKSDQEHMLHMRP---APEKRQRVPSAYNRFIKEEIRRIKTNNPDISHREAFSTAAKNWAHFPNIHFGL 161 88887767734556667777655...6**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 5.6E-71 | 7 | 161 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.07E-7 | 107 | 155 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 4.7E-5 | 110 | 155 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MSAQIAPPEH VCYVHCNFCN TILAVSVPSN SMLNIVTVRC GHCTSLLSVN LRGLIQSPPV 60 QDHSQENFKA HNISFRGNYP DYGTSSKYRM PMMFSTKSDQ EHMLHMRPAP EKRQRVPSAY 120 NRFIKEEIRR IKTNNPDISH REAFSTAAKN WAHFPNIHFG LGSNESSKKL DEAIAAPIPQ 180 KVQGLY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU099585 | 0.0 | EU099585.1 Triticum aestivum YABBY2 (YAB2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155667.1 | 1e-139 | protein YABBY 2-like isoform X1 | ||||
Swissprot | Q10FZ7 | 1e-112 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A453LQ31 | 1e-138 | A0A453LQ31_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5AL_EB97D69D7.2 | 1e-139 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 8e-63 | YABBY family protein |
Publications ? help Back to Top | |||
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