PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_B4E8A3115.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 1482aa    MW: 165346 Da    PI: 7.2697
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_B4E8A3115.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.22.5e-2613331392258
                             --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                   WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58  
                             +Dg++WrKYGqK++ gs +pr+Y+rCt++   gCpv+k+v+r+++dp +++++Y+geH++
  Traes_5AL_B4E8A3115.2 1333 EDGFSWRKYGQKDIIGSMHPRAYFRCTHRhvkGCPVTKQVQRTSTDPLLFDVVYHGEHTC 1392
                             8***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0024824129IPR002110Ankyrin repeat
PROSITE profilePS5029742.0971269IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.3E-492271IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.42E-415269IPR020683Ankyrin repeat-containing domain
CDDcd002044.21E-2235164No hitNo description
SMARTSM002482.94068IPR002110Ankyrin repeat
SMARTSM002482.975104IPR002110Ankyrin repeat
SMARTSM0024815109138IPR002110Ankyrin repeat
PfamPF127962.8E-9142200IPR020683Ankyrin repeat-containing domain
CDDcd002044.51E-23142265No hitNo description
PROSITE profilePS5008810.766143166IPR002110Ankyrin repeat
SMARTSM002484.4E-4143173IPR002110Ankyrin repeat
SMARTSM0024857177207IPR002110Ankyrin repeat
SMARTSM002488.2211241IPR002110Ankyrin repeat
SMARTSM00248590245274IPR002110Ankyrin repeat
CDDcd147985.77E-9335459No hitNo description
SuperFamilySSF525408.33E-54485758IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009314.0E-54505783IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3001.4E-14508644IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003642.6E-14523538No hitNo description
PRINTSPR003642.6E-14595609No hitNo description
PRINTSPR003642.6E-14692706No hitNo description
Gene3DG3DSA:3.80.10.102.6E-18740746IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520586.46E-228231190IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.6E-189151142IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003642.6E-1410471063No hitNo description
Gene3DG3DSA:2.20.25.801.2E-2613201392IPR003657WRKY domain
SuperFamilySSF1182901.06E-2313271392IPR003657WRKY domain
PROSITE profilePS5081122.15913271390IPR003657WRKY domain
SMARTSM007747.8E-3913321394IPR003657WRKY domain
PfamPF031067.2E-2513331392IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1482 aa     Download sequence    Send to blast
MGDSALHLAA RAGNVALVQK IFADCDPELV AELTDHQNQD GETALYVSAE MGHVEVVCEI  60
LKVCDLHSAF LKAHNSFDAF HIAAKQGHLV VLQELLKAFP ALAMTTNSVN ATALYTAALH  120
RHIGIVNLLL DTDPRLARIA RNNGKTALHI AARLGNVEVV VLLLNKDPAT VFRIDRKGQT  180
AVHMASKGHN AEILLELLKP DVSVIHLEDN KGDRPLHVAT RKGKTIIVQT LISIEEIDIN  240
AINGAGETAF AIAEKLGNEE LVNILREAGG VTAEEQVNPP KSIKRFKQTH DVQSQIKQKR  300
RTNMHFHTIR KSSQKLHTEA PVCALADAMF RLPAKLDELL ISHVHMLPRG AEDEIPLIKQ  360
DLEEIMAILQ EHDHPGRAED RAMTSKCLTK EVRELSYDME DSVDQYVHAV DTKRRIVPRR  420
KKYKITCRRG KTTARLPEKL KWRIWMANKI REFSVRSQEA LQRYSLFNHP GAHGISTSAT  480
STRHDVCFGS WYPTPCGELV GIDGHLNTLE AWLGKDGEQQ LKVVSVVGSG GVGKTTLSKE  540
LYRRIRGQFE CQAFVRTSRK PDIRRLLISL LSQVRPHQTP HTWKLHSLIA DIRTHLHDKR  600
YLIVIDDVWA TQTWDIINRA LPAGNLCSRI LITTEVEDVA LKCCGYDSRH VLMVKPLGYD  660
DSSKLFFSTA FGLQYECPPE LCDAAHNIVR KCAGSPLAMV TVASLLVSQI GKPEKWDYVN  720
EIFGHGLSTY PSSEGMKQVL NLSYNNLPHY LKACVMYLSI YEEDYIIQKD DLVKQWIAEG  780
LILATEEKDK EEISRRYFDE LISSRMILPV YTNDNDDVLS CTLHHMVLDF IKHKSLEENF  840
VIAIDHSQTT APLADKVRRL SLHFGNAEAT PPTNMRLSQV RTLAFFGVIE CLPSVIEFRL  900
LQVLILHLFG DDESVSFDLT GISELFRLRY LHVTCNATLE VPQTQMRGLQ YLETLKIDAR  960
VSAVPSDIVH LPSLLHLSLP VGTNLPNGID HMTSLCTLEY FDINVNSMEN VHSLGELTNL  1020
QDLRLTCSTV PSSYLKSKID SMGSILANLS NLRSVTLKSS GILESEPYSM IISCDGLSSV  1080
SSPPALLQRF EWLPRICTFS SIPKWISHLN KLCILKIGLR ELVSNDVAAL RGLPALTVLS  1140
LYVRAKPAEK IVFTRAGFLV LKCFKFRCSV PWLEFEVDAM PNLLKLKLSF DAHGVDQHRT  1200
IPVGMVHLTG LKEISAKIWG AGANERRAAK SALIDAIKMH SGCPTSSIQC LDGMFSGKDD  1260
NNSGIQEEEH LTLQKQYNIK EEDSKKQHDL PKDYMDVAYK QTSSSNNHRK SKRITQVRMQ  1320
VRVGSVQDNS ALEDGFSWRK YGQKDIIGSM HPRAYFRCTH RHVKGCPVTK QVQRTSTDPL  1380
LFDVVYHGEH TCLDSVGSPA TSCGHVAGVE VMSRSRPGVG FVSQSQAACS SQVMSSEVVS  1440
GSGSTAGLWG DEIDMPDPDR DDTGISADYL GGYEFDVSAF FA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C7e-394981107159759Disease resistance RPP13-like protein 4
6j5t_F7e-394981107159759Disease resistance RPP13-like protein 4
6j5t_G7e-394981107159759Disease resistance RPP13-like protein 4
6j5t_L7e-394981107159759Disease resistance RPP13-like protein 4
6j5t_O7e-394981107159759Disease resistance RPP13-like protein 4
6j5u_A7e-394981107159759Disease resistance RPP13-like protein 4
6j5v_A7e-394981107159759Disease resistance RPP13-like protein 4
6j5w_A7e-394981107159759Disease resistance RPP13-like protein 4
6j6i_C7e-394981107159759Disease resistance RPP13-like protein 4
6j6i_F7e-394981107159759Disease resistance RPP13-like protein 4
6j6i_G7e-394981107159759Disease resistance RPP13-like protein 4
6j6i_L7e-394981107159759Disease resistance RPP13-like protein 4
6j6i_O7e-394981107159759Disease resistance RPP13-like protein 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161815.10.0putative disease resistance RPP13-like protein 2 isoform X2
RefseqXP_020161816.10.0putative disease resistance RPP13-like protein 2 isoform X3
TrEMBLA0A3B6KLB40.0A0A3B6KLB4_WHEAT; Uncharacterized protein
STRINGTraes_5AL_B4E8A3115.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27511933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.18e-26WRKY DNA-binding protein 46
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]