PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_A66D34380.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 218aa    MW: 24812.1 Da    PI: 7.0758
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_A66D34380.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.45e-081682012154
                            HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                            k +yp+++++++L +++gL+ +q+ +WF N+R +
  Traes_5AL_A66D34380.1 168 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 201
                            579*****************************87 PP
2ELK28.33.9e-10122143122
                    ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                            ELK +L++++++++g++++E++
  Traes_5AL_A66D34380.1 122 ELKIELKQGFKSRIGDVREEIL 143
                            9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011880.0049122143IPR005539ELK domain
PROSITE profilePS512139.289122142IPR005539ELK domain
PfamPF037891.4E-6122143IPR005539ELK domain
PROSITE profilePS5007111.71142205IPR001356Homeobox domain
SuperFamilySSF466891.88E-16144208IPR009057Homeodomain-like
SMARTSM003894.2E-10144209IPR001356Homeobox domain
CDDcd000863.60E-12145206No hitNo description
Gene3DG3DSA:1.10.10.604.9E-25149208IPR009057Homeodomain-like
PfamPF059204.7E-18162201IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MCVRACMHVV VDAGCCVCVC AGAXXXXXXX XXXXXXQQHV RVHAVEAVMA CREIEQSLQD  60
LTGASLEEGT GATMSEDEDE GPPMIMEAAP MDMSSNGHDM MGFGPLVPTD TERSLMERVR  120
QELKIELKQG FKSRIGDVRE EILRKRRAGK LPGDTTTILK QWWQEHAKWP YPTEDDKAKL  180
VEETGLQLKQ INNWFINQRK RNWHNNSQTS TLKSKRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198217RKRNWHNNSQTSTLKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3695360.0AK369536.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2093A15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184577.11e-132homeobox protein knotted-1-like 3
SwissprotQ94LW31e-120KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLA0A446SI321e-131A0A446SI32_TRITD; Uncharacterized protein
TrEMBLA0A453J5V61e-132A0A453J5V6_AEGTS; Uncharacterized protein
STRINGTraes_5AL_A66D34380.11e-150(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-104KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]