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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AL_903412779.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 848aa MW: 91553.4 Da PI: 4.2863 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 8.9e-05 | 80 | 102 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++C+ +F ++s +++H+ + H Traes_5AL_903412779.2 80 ECKKCNLTFEDQSAYVQHQLSfH 102 5******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 81 | 102 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 848 aa Download sequence Send to blast |
MSLLGYVEAK PTTVQNNDVE VRDLSAVNTA GLHQQNDSTG DMQSAVSATS VTLPIHNGDS 60 QGQRQKPYKD EAPIEAVRKE CKKCNLTFED QSAYVQHQLS FHQRKAKRRK VDKSVGLGVG 120 KDGKLETQES QRTSEDKPGY FDHGVADVKS QGQSPAELFG GASSGDVGAQ LSLAAAPCGL 180 QEITGLPEQA EEPSAGEPVS GHQKDLPQET TGLPQQEKAL SATEPFAGHQ KEHVDNSGDH 240 EIHDGACHIA EEPLAFDVAS NLGTCKSPEP EVHEHDSSKD LEFSIADCSG SFDRSHEISK 300 IPQDVPCTTD APGEKSCADD PMDCADITLP KQVPEHCDML DHKFRGFPGE TGFNDQVENN 360 PLSANLDEPD LSSNSMEVDN SKIACKFGDV LNSTSSEYDK PVVDQTDRGV TALKNDAINI 420 DDGMNIDVRI KEVNLNSCLD TISSPVSGAN CETSNALHDG NRSSILAQCF GASSNDDNVC 480 QDESFVNQNN VSKAEIFVNQ SNDMVYQSNL NMNPVSPPQI SVDYFTNCSM NSEIKNNDNR 540 RDDNAKEQFV NSRNISSNEP GFDAEAYNND IFTGAMAETS FAQLNNAMNM KTDYSSCYSI 600 SDLNTLTGGT GTDGIDFHGM RSSFVSGSTS RSEPNELDFD IKGSMLEALE RSDSDLETQY 660 NGGDPAIDSL PAAGTSGTSV DDFMSMHTNF GSLTSLVRSV EGGPMSRLIQ DQQCDLQLGF 720 GAQKQQIYPS FEEHLRMASA GAPQFGNMGR HNPMPVPVPV PEPTLMLGYE PTLMLGYAPQ 780 FGSCPPVQLG WDLSKMVGVL QSVCVWCNTR FQHFGTAEQQ NDSVGFICPA CKDKTSGHLG 840 TLNNGSLL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 109 | QRKAKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372273 | 0.0 | AK372273.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2148N06. | |||
GenBank | AK374678 | 0.0 | AK374678.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3072I09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020176734.1 | 0.0 | uncharacterized protein LOC109762306 | ||||
TrEMBL | A0A3B6KI95 | 0.0 | A0A3B6KI95_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5AL_903412779.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2687 | 14 | 19 |
Publications ? help Back to Top | |||
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