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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AL_8954A60B6.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 349aa MW: 40817.4 Da PI: 9.5294 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.2 | 1.9e-08 | 149 | 189 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE ++ + v++ G++ Wk+ ++++g +++ ++k+ w+ Traes_5AL_8954A60B6.1 149 KWTQEEYHKIRQFVEKNGTD-WKALSEELG--KSEIHVKDTWRR 189 8*******************.********8..9*******9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2 | 73 | 144 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-4 | 74 | 137 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.112 | 76 | 129 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 9.514 | 144 | 195 | IPR017930 | Myb domain |
SMART | SM00717 | 0.054 | 146 | 193 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.05E-9 | 148 | 208 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.1E-9 | 149 | 201 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 2.7E-10 | 150 | 208 | No hit | No description |
PROSITE profile | PS50090 | 7.886 | 192 | 260 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0031 | 196 | 262 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-8 | 202 | 261 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.06E-6 | 240 | 318 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.619 | 262 | 315 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.3 | 266 | 317 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MEVIKKANAD GKGDKKKKKR KEGIEGGKRE KEKAARSKNK GRRVTFADSV VVFSIEGRDD 60 EEGGSSGGSE LVHGQRFTLE EEATLMEAMR DYAEMKQLGE EGLEMIRRCR KYPELKGCWS 120 DIGKSLPHRP HEAIYKRARI LLTRSDERKW TQEEYHKIRQ FVEKNGTDWK ALSEELGKSE 180 IHVKDTWRRI KPKNLKKGRW TQDEHQNLFD LVNLDLRLKA HQEKNPGHRK LRDNISWEAI 240 SDKLTSRNHK NCCLKWYVTL ASPLVKQGVW ADIDDYRLVE ALQKVDAVCI EDVDWESLLG 300 HRSGEVCRQR WNQMVRGIGS HRQKTFIEQV EVLSKRYCPE MIDYRESEN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 14 | 20 | KKKKKRK |
2 | 15 | 20 | KKKKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014754923.1 | 0.0 | cyclin-D-binding Myb-like transcription factor 1 isoform X1 | ||||
Refseq | XP_015643783.1 | 0.0 | RNA polymerase I termination factor isoform X1 | ||||
TrEMBL | A0A3B6KEW6 | 0.0 | A0A3B6KEW6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446SYM3 | 0.0 | A0A446SYM3_TRITD; Uncharacterized protein | ||||
STRING | Traes_5AL_8954A60B6.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5405 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41020.1 | 1e-102 | MYB_related family protein |
Publications ? help Back to Top | |||
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