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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AL_6FDB440FB.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 69aa MW: 7674.48 Da PI: 7.124 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 29.3 | 1.7e-09 | 4 | 50 | 21 | 59 |
-EEEEEE-ST...T---EEEEEE-SSSTT.....EEEEEEES--SS- CS WRKY 21 prsYYrCtsa...gCpvkkkversaedpk.....vveitYegeHnhe 59 r+YYrCt + gCp+k+ v+r+++d++ +++Y +eH ++ Traes_5AL_6FDB440FB.1 4 CRNYYRCTNStnqGCPAKRTVQRNDDDGSddgrpKYTVVYISEHSCK 50 79*****9888889**********99986444446899999999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03106 | 3.9E-11 | 4 | 50 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.02E-9 | 4 | 51 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.1E-10 | 4 | 51 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-6 | 5 | 51 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 9.844 | 5 | 30 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 69 aa Download sequence Send to blast |
MAICRNYYRC TNSTNQGCPA KRTVQRNDDD GSDDGRPKYT VVYISEHSCK ATESAAVPVI 60 LETTVRTDT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020196414.1 | 3e-39 | WRKY transcription factor 22-like | ||||
TrEMBL | A0A446SY02 | 3e-43 | A0A446SY02_TRITD; Uncharacterized protein | ||||
STRING | Traes_5AL_6FDB440FB.1 | 3e-44 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5760 | 30 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40750.1 | 5e-07 | WRKY DNA-binding protein 54 |
Publications ? help Back to Top | |||
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